..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1508_22x431_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 172 patterns found. (out of a total of 431 sites) 

. 298 sites without polymorphism (69.14%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 9Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    1 sec) [     -3189.9244] [Alpha              ][  0.500960]
. (   36 sec) [     -3187.2806] [  315] [depth=    1]
. (   47 sec) [     -3185.7448] [  321] [depth=    2]
. (   47 sec) [     -3183.8823] [  316] [depth=    2]
. (   48 sec) [     -3183.5643] [  316] [depth=    1]
. (   48 sec) [     -3180.9506] [  316] [depth=    1]
. (   48 sec) [     -3180.8597] [  316] [depth=    1]
. (   48 sec) [     -3179.8683] [  314] [depth=    1]
. (   52 sec) [     -3179.6704] [  314] [depth=    1]
. (   52 sec) [     -3178.5431] [  314] [depth=    1]
. (   52 sec) [     -3178.2454] [  314] [depth=    1]
. (   52 sec) [     -3178.1591] [  314] [depth=    1]
. (   52 sec) [     -3178.0554] [  314] [depth=    1]
. (   53 sec) [     -3177.9334] [  314] [depth=    1]
. (   66 sec) [     -3173.9526] [  314] [depth=    1]
. (   67 sec) [     -3171.5725] [  314] [depth=    1]
. (   68 sec) [     -3171.4521] [  314] [depth=    1]
. (   68 sec) [     -3169.9514] [  314] [depth=    1]
. (   94 sec) [     -3165.1092] [Branch lengths     ]
. (   94 sec) [     -3155.7839] [Alpha              ][  0.271877]
. (  149 sec) [     -3155.0397] [  318] [depth=    4]
. (  173 sec) [     -3155.0161] [  318] [depth=    1]
. (  179 sec) [     -3154.9816] [  318] [depth=    2]
. (  238 sec) [     -3154.9658] [  318] [depth=    1]
. (  243 sec) [     -3152.2638] [Branch lengths     ]
. (  244 sec) [     -3152.2635] [Alpha              ][  0.271044]
. (  446 sec) [     -3152.2145] [Branch lengths     ]
. (  446 sec) [     -3152.2145] [Topology           ]
. (  447 sec) [     -3152.2138] [Topology           ]
. (  448 sec) [     -3152.2138] [Alpha              ][  0.271315]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -3152.213789.

. Printing the most likely tree in file 'proteic_M1508_22x431_2003.phy_phyml_tree.txt'...


. Time used 0h7m36s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
358.96user 0.00system 7:36.03elapsed 78%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps