.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1601_36x340_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 322 patterns found. (out of a total of 340 sites) . 79 sites without polymorphism (23.24%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 28Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -7041.5767] [Alpha ][ 1.039970] . ( 1 sec) [ -7041.4766] [ 1170] [depth= 1] . ( 2 sec) [ -7032.3161] [ 1167] [depth= 1] . ( 30 sec) [ -7032.0406] [ 1171] [depth= 1] . ( 58 sec) [ -7029.4414] [ 1170] [depth= 1] . ( 103 sec) [ -7021.2467] [ 1169] [depth= 1] . ( 104 sec) [ -7020.6891] [ 1169] [depth= 1] . ( 104 sec) [ -7019.0608] [ 1169] [depth= 1] . ( 104 sec) [ -7019.0134] [ 1169] [depth= 1] . ( 112 sec) [ -7014.7294] [ 1168] [depth= 1] . ( 113 sec) [ -7014.0785] [ 1172] [depth= 2] . ( 113 sec) [ -6995.0640] [ 1171] [depth= 3] . ( 114 sec) [ -6989.8121] [ 1169] [depth= 1] . ( 114 sec) [ -6987.0472] [ 1167] [depth= 1] . ( 128 sec) [ -6983.8166] [ 1168] [depth= 2] . ( 128 sec) [ -6982.3027] [ 1166] [depth= 1] . ( 165 sec) [ -6975.1448] [ 1163] [depth= 1] . ( 205 sec) [ -6973.3467] [ 1163] [depth= 1] . ( 217 sec) [ -6969.0660] [ 1162] [depth= 1] . ( 217 sec) [ -6965.6660] [ 1162] [depth= 2] . ( 218 sec) [ -6963.6494] [ 1162] [depth= 1] . ( 256 sec) [ -6963.3661] [ 1162] [depth= 1] . ( 256 sec) [ -6957.2622] [ 1159] [depth= 2] . ( 296 sec) [ -6953.8349] [ 1158] [depth= 1] . ( 296 sec) [ -6951.2446] [ 1157] [depth= 1] . ( 303 sec) [ -6951.1408] [ 1157] [depth= 1] . ( 344 sec) [ -6920.4360] [Branch lengths ] . ( 344 sec) [ -6920.1948] [Alpha ][ 1.117385] . ( 361 sec) [ -6918.7101] [ 1154] [depth= 1] . ( 364 sec) [ -6917.2558] [ 1155] [depth= 4] . ( 531 sec) [ -6916.4072] [ 1155] [depth= 1] . ( 922 sec) [ -6912.9641] [Branch lengths ] . ( 923 sec) [ -6912.9639] [Alpha ][ 1.115145] . ( 1648 sec) [ -6912.5176] [Branch lengths ] . ( 1648 sec) [ -6912.5176] [Topology ] . ( 1654 sec) [ -6912.4635] [Topology ] . ( 1659 sec) [ -6912.4413] [Topology ] . ( 1663 sec) [ -6912.4295] [Topology ] . ( 1668 sec) [ -6912.4229] [Topology ] . ( 1673 sec) [ -6912.4193] [Topology ] . ( 1678 sec) [ -6912.4171] [Topology ] . ( 1679 sec) [ -6912.4114] [Alpha ][ 1.102780] . ( 1679 sec) [ -6912.4114] [Topology ] . ( 1684 sec) [ -6912.4094] [Topology ] . ( 1688 sec) [ -6912.4083] [Topology ] . ( 1693 sec) [ -6912.4077] [Topology ] . ( 1694 sec) [ -6912.4077] [Alpha ][ 1.101636] . ( 1695 sec) [ -6912.4077] [Topology ] . ( 1700 sec) [ -6912.4073] [Topology ] . ( 1701 sec) [ -6912.4073] [Alpha ][ 1.101636] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -6912.407324. . Printing the most likely tree in file 'proteic_M1601_36x340_2003.phy_phyml_tree.txt'... . Time used 0h28m52s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 1331.99user 0.00system 28:52.46elapsed 76%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps