..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1882_8x705_2004.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 524 patterns found. (out of a total of 705 sites) 

. 233 sites without polymorphism (33.05%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 8Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    1 sec) [     -6233.3784] [Alpha              ][  1.337069]
. (    1 sec) [     -6226.4796] [  936] [depth=    1]
. (    1 sec) [     -6209.3135] [  932] [depth=    1]
. (    1 sec) [     -6204.7689] [  932] [depth=    1]
. (   13 sec) [     -6197.4732] [Branch lengths     ]
. (   13 sec) [     -6194.2674] [Alpha              ][  1.019336]
. (   27 sec) [     -6192.4801] [Branch lengths     ]
. (   27 sec) [     -6192.4801] [Topology           ]
. (   28 sec) [     -6192.3515] [Topology           ]
. (   29 sec) [     -6192.3157] [Topology           ]
. (   30 sec) [     -6192.3034] [Topology           ]
. (   30 sec) [     -6192.2991] [Topology           ]
. (   31 sec) [     -6192.2976] [Topology           ]
. (   32 sec) [     -6192.2970] [Topology           ]
. (   32 sec) [     -6192.0823] [Alpha              ][  0.955316]
. (   32 sec) [     -6192.0823] [Topology           ]
. (   33 sec) [     -6192.0315] [Topology           ]
. (   34 sec) [     -6192.0193] [Topology           ]
. (   35 sec) [     -6192.0159] [Topology           ]
. (   35 sec) [     -6192.0149] [Topology           ]
. (   36 sec) [     -6191.9979] [Alpha              ][  0.938584]
. (   36 sec) [     -6191.9979] [Topology           ]
. (   36 sec) [     -6191.9919] [Topology           ]
. (   37 sec) [     -6191.9903] [Topology           ]
. (   38 sec) [     -6191.9898] [Topology           ]
. (   38 sec) [     -6191.9877] [Alpha              ][  0.932488]
. (   38 sec) [     -6191.9877] [Topology           ]
. (   39 sec) [     -6191.9866] [Topology           ]
. (   40 sec) [     -6191.9863] [Topology           ]
. (   40 sec) [     -6191.9861] [Alpha              ][  0.930603]
. (   40 sec) [     -6191.9861] [Topology           ]
. (   41 sec) [     -6191.9858] [Topology           ]
. (   41 sec) [     -6191.9858] [Alpha              ][  0.929672]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -6191.985792.

. Printing the most likely tree in file 'proteic_M1882_8x705_2004.phy_phyml_tree.txt'...


. Time used 0h0m49s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
48.05user 0.00system 0:48.16elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps