.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2344_7x232_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 145 patterns found. (out of a total of 232 sites) . 124 sites without polymorphism (53.45%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 2Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -1585.9438] [Alpha ][ 1.316624] . ( 5 sec) [ -1583.5345] [Branch lengths ] . ( 5 sec) [ -1583.5345] [Topology ] . ( 5 sec) [ -1583.4802] [Topology ] . ( 5 sec) [ -1583.4782] [Topology ] . ( 5 sec) [ -1583.4778] [Topology ] . ( 5 sec) [ -1583.4587] [Alpha ][ 1.234442] . ( 5 sec) [ -1583.4587] [Topology ] . ( 6 sec) [ -1583.4578] [Topology ] . ( 6 sec) [ -1583.4578] [Alpha ][ 1.231607] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -1583.457760. . Printing the most likely tree in file 'proteic_M2344_7x232_2005.phy_phyml_tree.txt'... . Time used 0h0m7s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 6.62user 0.00system 0:06.77elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps