.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2476_30x719_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 620 patterns found. (out of a total of 719 sites) . 115 sites without polymorphism (15.99%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 44Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -24774.5534] [Alpha ][ 0.568788] . ( 33 sec) [ -24770.6356] [ 4912] [depth= 2] . ( 34 sec) [ -24754.7924] [ 4911] [depth= 1] . ( 48 sec) [ -24754.0997] [ 4917] [depth= 1] . ( 49 sec) [ -24751.1178] [ 4912] [depth= 1] . ( 106 sec) [ -24750.4709] [ 4917] [depth= 1] . ( 119 sec) [ -24743.9665] [ 4922] [depth= 1] . ( 120 sec) [ -24743.4236] [ 4918] [depth= 3] . ( 155 sec) [ -24739.3444] [ 4935] [depth= 1] . ( 155 sec) [ -24729.5650] [ 4918] [depth= 1] . ( 156 sec) [ -24720.1686] [ 4918] [depth= 2] . ( 156 sec) [ -24719.7769] [ 4917] [depth= 1] . ( 157 sec) [ -24715.5707] [ 4918] [depth= 1] . ( 158 sec) [ -24714.3064] [ 4926] [depth= 1] . ( 175 sec) [ -24706.7868] [ 4918] [depth= 1] . ( 189 sec) [ -24703.8256] [ 4918] [depth= 3] . ( 200 sec) [ -24701.0479] [ 4921] [depth= 1] . ( 201 sec) [ -24692.6015] [ 4922] [depth= 1] . ( 201 sec) [ -24686.2404] [ 4921] [depth= 1] . ( 205 sec) [ -24675.9285] [ 4930] [depth= 1] . ( 206 sec) [ -24664.9466] [ 4935] [depth= 3] . ( 224 sec) [ -24664.5524] [ 4936] [depth= 1] . ( 235 sec) [ -24658.8132] [ 4935] [depth= 1] . ( 246 sec) [ -24653.3155] [ 4926] [depth= 1] . ( 247 sec) [ -24648.1191] [ 4922] [depth= 1] . ( 247 sec) [ -24647.1957] [ 4919] [depth= 1] . ( 248 sec) [ -24636.7646] [ 4920] [depth= 2] . ( 249 sec) [ -24629.9670] [ 4913] [depth= 1] . ( 286 sec) [ -24628.8705] [ 4918] [depth= 1] . ( 287 sec) [ -24626.7749] [ 4925] [depth= 1] . ( 318 sec) [ -24622.4790] [ 4935] [depth= 1] . ( 354 sec) [ -24578.1187] [Branch lengths ] . ( 356 sec) [ -24569.9371] [Alpha ][ 0.684664] . ( 530 sec) [ -24562.6113] [ 4929] [depth= 1] . ( 787 sec) [ -24560.4375] [ 4923] [depth= 1] . ( 847 sec) [ -24557.7764] [ 4924] [depth= 1] . ( 1068 sec) [ -24556.8284] [ 4931] [depth= 1] . ( 1142 sec) [ -24545.7403] [Branch lengths ] . ( 1143 sec) [ -24545.6135] [Alpha ][ 0.700999] . ( 2035 sec) [ -24542.6534] [Branch lengths ] . ( 2035 sec) [ -24542.6534] [Topology ] . ( 2042 sec) [ -24542.0690] [Topology ] . ( 2047 sec) [ -24541.8010] [Topology ] . ( 2054 sec) [ -24541.6320] [Topology ] . ( 2060 sec) [ -24541.5225] [Topology ] . ( 2067 sec) [ -24541.4503] [Topology ] . ( 2073 sec) [ -24541.4031] [Topology ] . ( 2075 sec) [ -24541.3821] [Alpha ][ 0.707608] . ( 2075 sec) [ -24541.3821] [Topology ] . ( 2082 sec) [ -24541.3484] [Topology ] . ( 2088 sec) [ -24541.3267] [Topology ] . ( 2095 sec) [ -24541.3124] [Topology ] . ( 2101 sec) [ -24541.3029] [Topology ] . ( 2107 sec) [ -24541.2967] [Topology ] . ( 2113 sec) [ -24541.2925] [Topology ] . ( 2114 sec) [ -24541.2923] [Alpha ][ 0.708315] . ( 2114 sec) [ -24541.2923] [Topology ] . ( 2121 sec) [ -24541.2895] [Topology ] . ( 2126 sec) [ -24541.2876] [Topology ] . ( 2133 sec) [ -24541.2864] [Topology ] . ( 2139 sec) [ -24541.2856] [Topology ] . ( 2140 sec) [ -24541.2856] [Alpha ][ 0.708315] . ( 2141 sec) [ -24541.2856] [Topology ] . ( 2147 sec) [ -24541.2851] [Topology ] . ( 2149 sec) [ -24541.2851] [Alpha ][ 0.708315] . Checking for NNIs, optimizing five branches... . ( 2206 sec) [ -24540.8918] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -24540.891848. . Printing the most likely tree in file 'proteic_M2476_30x719_2005.phy_phyml_tree.txt'... . Time used 0h37m39s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 1438.88user 0.00system 37:39.51elapsed 63%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps