.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2479_30x627_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 521 patterns found. (out of a total of 627 sites) . 123 sites without polymorphism (19.62%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 37Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -18178.5487] [Alpha ][ 0.611907] . ( 14 sec) [ -18176.6899] [ 3274] [depth= 1] . ( 14 sec) [ -18176.2365] [ 3272] [depth= 1] . ( 27 sec) [ -18173.3351] [ 3274] [depth= 1] . ( 72 sec) [ -18171.4157] [ 3281] [depth= 1] . ( 72 sec) [ -18170.8632] [ 3271] [depth= 2] . ( 73 sec) [ -18165.4993] [ 3277] [depth= 2] . ( 204 sec) [ -18160.9435] [ 3276] [depth= 1] . ( 204 sec) [ -18160.9318] [ 3276] [depth= 1] . ( 206 sec) [ -18159.1766] [ 3277] [depth= 1] . ( 206 sec) [ -18156.3813] [ 3276] [depth= 1] . ( 207 sec) [ -18156.0068] [ 3273] [depth= 1] . ( 282 sec) [ -18154.4869] [ 3274] [depth= 2] . ( 299 sec) [ -18150.2513] [ 3279] [depth= 1] . ( 299 sec) [ -18143.9116] [ 3267] [depth= 2] . ( 300 sec) [ -18137.9205] [ 3265] [depth= 1] . ( 301 sec) [ -18121.1084] [ 3268] [depth= 3] . ( 304 sec) [ -18115.0189] [ 3265] [depth= 1] . ( 330 sec) [ -18110.7204] [ 3274] [depth= 1] . ( 334 sec) [ -18109.6242] [ 3274] [depth= 1] . ( 350 sec) [ -18108.0397] [ 3274] [depth= 1] . ( 351 sec) [ -18107.2367] [ 3274] [depth= 1] . ( 360 sec) [ -18099.1827] [ 3271] [depth= 1] . ( 364 sec) [ -18096.8950] [ 3270] [depth= 1] . ( 376 sec) [ -18066.4402] [Branch lengths ] . ( 377 sec) [ -18062.5462] [Alpha ][ 0.711844] . ( 617 sec) [ -18062.0977] [ 3271] [depth= 1] . ( 618 sec) [ -18062.0672] [ 3270] [depth= 1] . ( 723 sec) [ -18061.0157] [ 3272] [depth= 2] . ( 773 sec) [ -18060.1183] [ 3269] [depth= 1] . ( 868 sec) [ -18055.5284] [Branch lengths ] . ( 869 sec) [ -18055.3861] [Alpha ][ 0.732486] . ( 1425 sec) [ -18054.6526] [Branch lengths ] . ( 1425 sec) [ -18054.6526] [Topology ] . ( 1429 sec) [ -18054.5249] [Topology ] . ( 1433 sec) [ -18054.3501] [Topology ] . ( 1437 sec) [ -18054.3219] [Topology ] . ( 1441 sec) [ -18054.3104] [Topology ] . ( 1444 sec) [ -18054.3046] [Topology ] . ( 1447 sec) [ -18054.3014] [Topology ] . ( 1451 sec) [ -18054.2998] [Topology ] . ( 1451 sec) [ -18054.2034] [Alpha ][ 0.750370] . ( 1451 sec) [ -18054.2034] [Topology ] . ( 1455 sec) [ -18054.1896] [Topology ] . ( 1460 sec) [ -18054.1831] [Topology ] . ( 1465 sec) [ -18054.1796] [Topology ] . ( 1469 sec) [ -18054.1778] [Topology ] . ( 1473 sec) [ -18054.1767] [Topology ] . ( 1478 sec) [ -18054.1762] [Topology ] . ( 1479 sec) [ -18054.1739] [Alpha ][ 0.753122] . ( 1479 sec) [ -18054.1739] [Topology ] . ( 1483 sec) [ -18054.1730] [Topology ] . ( 1484 sec) [ -18054.1730] [Alpha ][ 0.753122] . Checking for NNIs, optimizing five branches... . ( 1522 sec) [ -18053.7221] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -18053.722139. . Printing the most likely tree in file 'proteic_M2479_30x627_2005.phy_phyml_tree.txt'... . Time used 0h26m1s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 1140.89user 0.00system 26:01.84elapsed 73%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps