.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2512_14x717_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 703 patterns found. (out of a total of 717 sites) . 39 sites without polymorphism (5.44%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 21Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -20898.1075] [Alpha ][ 1.719622] . ( 6 sec) [ -20894.6985] [ 4556] [depth= 1] . ( 7 sec) [ -20890.9149] [ 4562] [depth= 2] . ( 8 sec) [ -20887.8378] [ 4566] [depth= 1] . ( 8 sec) [ -20881.1263] [ 4552] [depth= 2] . ( 9 sec) [ -20876.4037] [ 4547] [depth= 1] . ( 12 sec) [ -20862.1845] [ 4563] [depth= 2] . ( 13 sec) [ -20856.0682] [ 4558] [depth= 1] . ( 14 sec) [ -20836.4638] [ 4611] [depth= 2] . ( 14 sec) [ -20652.6517] [ 4560] [depth= 2] . ( 19 sec) [ -20644.0434] [ 4565] [depth= 1] . ( 25 sec) [ -20472.1788] [ 4548] [depth= 1] . ( 26 sec) [ -20470.4804] [ 4549] [depth= 2] . ( 26 sec) [ -20287.9687] [ 4546] [depth= 1] . ( 27 sec) [ -20286.6327] [ 4541] [depth= 1] . ( 30 sec) [ -20286.3573] [ 4543] [depth= 1] . ( 31 sec) [ -20268.6580] [ 4547] [depth= 1] . ( 31 sec) [ -20265.0242] [ 4539] [depth= 1] . ( 32 sec) [ -20254.5358] [ 4539] [depth= 1] . ( 33 sec) [ -20253.4943] [ 4539] [depth= 1] . ( 35 sec) [ -20245.8726] [ 4599] [depth= 5] . ( 36 sec) [ -20231.1343] [ 4609] [depth= 1] . ( 40 sec) [ -20158.5041] [Branch lengths ] . ( 41 sec) [ -20154.8893] [Alpha ][ 1.451015] . ( 47 sec) [ -20151.8578] [ 4607] [depth= 1] . ( 54 sec) [ -20151.7240] [ 4604] [depth= 1] . ( 65 sec) [ -20151.2946] [ 4615] [depth= 1] . ( 74 sec) [ -20148.1239] [ 4604] [depth= 1] . ( 79 sec) [ -20146.2825] [ 4629] [depth= 1] . ( 83 sec) [ -20139.6192] [ 4637] [depth= 1] . ( 83 sec) [ -20136.9895] [ 4621] [depth= 1] . ( 84 sec) [ -20136.0068] [ 4567] [depth= 4] . ( 87 sec) [ -20128.1375] [ 4567] [depth= 1] . ( 93 sec) [ -20127.3933] [ 4571] [depth= 4] . ( 94 sec) [ -20126.9337] [ 4532] [depth= 4] . ( 94 sec) [ -20124.0207] [ 4530] [depth= 1] . ( 95 sec) [ -20121.5170] [ 4532] [depth= 1] . ( 100 sec) [ -20105.6257] [Branch lengths ] . ( 100 sec) [ -20105.1457] [Alpha ][ 1.368024] . ( 167 sec) [ -20104.9194] [ 4532] [depth= 1] . ( 203 sec) [ -20100.6573] [Branch lengths ] . ( 204 sec) [ -20100.5870] [Alpha ][ 1.339191] . ( 268 sec) [ -20100.3988] [ 4543] [depth= 4] . ( 305 sec) [ -20099.2036] [Branch lengths ] . ( 305 sec) [ -20099.0389] [Alpha ][ 1.296064] . ( 372 sec) [ -20098.7784] [ 4579] [depth= 6] . ( 409 sec) [ -20098.2962] [Branch lengths ] . ( 409 sec) [ -20098.2655] [Alpha ][ 1.277551] . ( 410 sec) [ -20098.2655] [Topology ] . ( 412 sec) [ -20098.1454] [Topology ] . ( 414 sec) [ -20098.0887] [Topology ] . ( 416 sec) [ -20098.0524] [Topology ] . ( 418 sec) [ -20098.0265] [Topology ] . ( 420 sec) [ -20098.0070] [Topology ] . ( 422 sec) [ -20097.9919] [Topology ] . ( 422 sec) [ -20097.9677] [Alpha ][ 1.261497] . ( 422 sec) [ -20097.9677] [Topology ] . ( 424 sec) [ -20097.9436] [Topology ] . ( 426 sec) [ -20097.9308] [Topology ] . ( 428 sec) [ -20097.9215] [Topology ] . ( 430 sec) [ -20097.9142] [Topology ] . ( 432 sec) [ -20097.9082] [Topology ] . ( 434 sec) [ -20097.9032] [Topology ] . ( 434 sec) [ -20097.8959] [Alpha ][ 1.252780] . ( 434 sec) [ -20097.8959] [Topology ] . ( 436 sec) [ -20097.8880] [Topology ] . ( 438 sec) [ -20097.8834] [Topology ] . ( 440 sec) [ -20097.8798] [Topology ] . ( 442 sec) [ -20097.8767] [Topology ] . ( 444 sec) [ -20097.8739] [Topology ] . ( 446 sec) [ -20097.8715] [Topology ] . ( 447 sec) [ -20097.8693] [Alpha ][ 1.248013] . ( 447 sec) [ -20097.8693] [Topology ] . ( 449 sec) [ -20097.8660] [Topology ] . ( 451 sec) [ -20097.8636] [Topology ] . ( 453 sec) [ -20097.8615] [Topology ] . ( 455 sec) [ -20097.8596] [Topology ] . ( 457 sec) [ -20097.8578] [Topology ] . ( 459 sec) [ -20097.8561] [Topology ] . ( 459 sec) [ -20097.8555] [Alpha ][ 1.245432] . ( 459 sec) [ -20097.8555] [Topology ] . ( 461 sec) [ -20097.8535] [Topology ] . ( 463 sec) [ -20097.8518] [Topology ] . ( 465 sec) [ -20097.8503] [Topology ] . ( 467 sec) [ -20097.8488] [Topology ] . ( 469 sec) [ -20097.8473] [Topology ] . ( 471 sec) [ -20097.8458] [Topology ] . ( 472 sec) [ -20097.8457] [Alpha ][ 1.244012] . ( 472 sec) [ -20097.8457] [Topology ] . ( 474 sec) [ -20097.8442] [Topology ] . ( 476 sec) [ -20097.8428] [Topology ] . ( 478 sec) [ -20097.8414] [Topology ] . ( 480 sec) [ -20097.8401] [Topology ] . ( 482 sec) [ -20097.8388] [Topology ] . ( 484 sec) [ -20097.8375] [Topology ] . ( 484 sec) [ -20097.8375] [Alpha ][ 1.242768] . ( 484 sec) [ -20097.8375] [Topology ] . ( 486 sec) [ -20097.8361] [Topology ] . ( 488 sec) [ -20097.8349] [Topology ] . ( 490 sec) [ -20097.8336] [Topology ] . ( 492 sec) [ -20097.8324] [Topology ] . ( 494 sec) [ -20097.8312] [Topology ] . ( 496 sec) [ -20097.8300] [Topology ] . ( 496 sec) [ -20097.8300] [Alpha ][ 1.242768] . ( 496 sec) [ -20097.8300] [Topology ] . ( 498 sec) [ -20097.8289] [Topology ] . ( 500 sec) [ -20097.8277] [Topology ] . ( 502 sec) [ -20097.8266] [Topology ] . ( 504 sec) [ -20097.8254] [Topology ] . ( 506 sec) [ -20097.8243] [Topology ] . ( 508 sec) [ -20097.8232] [Topology ] . ( 509 sec) [ -20097.8232] [Alpha ][ 1.242768] . ( 509 sec) [ -20097.8232] [Topology ] . ( 511 sec) [ -20097.8221] [Topology ] . ( 513 sec) [ -20097.8211] [Topology ] . ( 515 sec) [ -20097.8200] [Topology ] . ( 517 sec) [ -20097.8190] [Topology ] . ( 519 sec) [ -20097.8179] [Topology ] . ( 521 sec) [ -20097.8169] [Topology ] . ( 521 sec) [ -20097.8169] [Alpha ][ 1.242768] . ( 521 sec) [ -20097.8169] [Topology ] . ( 523 sec) [ -20097.8159] [Topology ] . ( 525 sec) [ -20097.8149] [Topology ] . ( 526 sec) [ -20097.8149] [Alpha ][ 1.242768] . ( 526 sec) [ -20097.8149] [Topology ] . ( 528 sec) [ -20097.8139] [Topology ] . ( 528 sec) [ -20097.8139] [Alpha ][ 1.242768] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -20097.813945. . Printing the most likely tree in file 'proteic_M2512_14x717_2006.phy_phyml_tree.txt'... . Time used 0h9m18s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 551.53user 0.00system 9:18.64elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps