.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2558_27x1060_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 746 patterns found. (out of a total of 1060 sites) . 362 sites without polymorphism (34.15%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 47Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -37472.1429] [Alpha ][ 0.689004] . ( 17 sec) [ -37441.7027] [ 7658] [depth= 1] . ( 18 sec) [ -37425.7851] [ 7666] [depth= 1] . ( 64 sec) [ -37424.7015] [ 7669] [depth= 1] . ( 117 sec) [ -37395.6519] [ 7666] [depth= 1] . ( 146 sec) [ -37395.0472] [ 7667] [depth= 2] . ( 162 sec) [ -37390.6364] [ 7666] [depth= 1] . ( 222 sec) [ -37369.2911] [ 7662] [depth= 2] . ( 223 sec) [ -37358.2377] [ 7651] [depth= 1] . ( 229 sec) [ -37351.3270] [ 7662] [depth= 2] . ( 230 sec) [ -37345.1598] [ 7656] [depth= 2] . ( 232 sec) [ -37341.4484] [ 7658] [depth= 1] . ( 252 sec) [ -37341.2910] [ 7655] [depth= 1] . ( 276 sec) [ -37336.8263] [ 7660] [depth= 2] . ( 277 sec) [ -37333.5748] [ 7660] [depth= 1] . ( 296 sec) [ -37330.7150] [ 7656] [depth= 1] . ( 297 sec) [ -37328.6097] [ 7653] [depth= 2] . ( 303 sec) [ -37317.0566] [ 7657] [depth= 2] . ( 352 sec) [ -37316.0993] [ 7644] [depth= 1] . ( 402 sec) [ -37312.0357] [ 7646] [depth= 1] . ( 433 sec) [ -37310.2475] [ 7637] [depth= 1] . ( 436 sec) [ -37224.1924] [Branch lengths ] . ( 437 sec) [ -37223.2309] [Alpha ][ 0.654927] . ( 694 sec) [ -37220.0994] [ 7640] [depth= 1] . ( 844 sec) [ -37216.9455] [ 7637] [depth= 1] . ( 951 sec) [ -37214.9865] [ 7640] [depth= 2] . ( 954 sec) [ -37213.3752] [ 7640] [depth= 4] . ( 1104 sec) [ -37198.5800] [Branch lengths ] . ( 1106 sec) [ -37197.6860] [Alpha ][ 0.623672] . ( 1486 sec) [ -37196.9526] [ 7644] [depth= 1] . ( 1627 sec) [ -37196.4554] [ 7646] [depth= 1] . ( 1810 sec) [ -37192.9940] [Branch lengths ] . ( 1811 sec) [ -37192.4175] [Alpha ][ 0.599648] . ( 2603 sec) [ -37190.5140] [Branch lengths ] . ( 2603 sec) [ -37190.5140] [Topology ] . ( 2610 sec) [ -37190.1713] [Topology ] . ( 2616 sec) [ -37190.0267] [Topology ] . ( 2623 sec) [ -37189.9479] [Topology ] . ( 2630 sec) [ -37189.8999] [Topology ] . ( 2637 sec) [ -37189.8693] [Topology ] . ( 2643 sec) [ -37189.8484] [Topology ] . ( 2645 sec) [ -37188.9681] [Alpha ][ 0.571144] . ( 2645 sec) [ -37188.9681] [Topology ] . ( 2652 sec) [ -37188.5969] [Topology ] . ( 2658 sec) [ -37188.4538] [Topology ] . ( 2665 sec) [ -37188.3869] [Topology ] . ( 2672 sec) [ -37188.3538] [Topology ] . ( 2678 sec) [ -37188.3362] [Topology ] . ( 2685 sec) [ -37188.3263] [Topology ] . ( 2686 sec) [ -37188.0159] [Alpha ][ 0.554957] . ( 2687 sec) [ -37188.0159] [Topology ] . ( 2693 sec) [ -37187.8608] [Topology ] . ( 2700 sec) [ -37187.8023] [Topology ] . ( 2707 sec) [ -37187.7755] [Topology ] . ( 2713 sec) [ -37187.7625] [Topology ] . ( 2719 sec) [ -37187.7557] [Topology ] . ( 2725 sec) [ -37187.7519] [Topology ] . ( 2727 sec) [ -37187.6137] [Alpha ][ 0.544563] . ( 2727 sec) [ -37187.6137] [Topology ] . ( 2735 sec) [ -37187.5451] [Topology ] . ( 2742 sec) [ -37187.5199] [Topology ] . ( 2748 sec) [ -37187.5085] [Topology ] . ( 2755 sec) [ -37187.5030] [Topology ] . ( 2762 sec) [ -37187.5001] [Topology ] . ( 2768 sec) [ -37187.4985] [Topology ] . ( 2770 sec) [ -37187.4335] [Alpha ][ 0.537152] . ( 2770 sec) [ -37187.4335] [Topology ] . ( 2777 sec) [ -37187.3976] [Topology ] . ( 2784 sec) [ -37187.3847] [Topology ] . ( 2792 sec) [ -37187.3789] [Topology ] . ( 2798 sec) [ -37187.3762] [Topology ] . ( 2804 sec) [ -37187.3748] [Topology ] . ( 2809 sec) [ -37187.3740] [Topology ] . ( 2810 sec) [ -37187.3446] [Alpha ][ 0.532208] . ( 2811 sec) [ -37187.3446] [Topology ] . ( 2817 sec) [ -37187.3280] [Topology ] . ( 2823 sec) [ -37187.3219] [Topology ] . ( 2828 sec) [ -37187.3193] [Topology ] . ( 2834 sec) [ -37187.3180] [Topology ] . ( 2840 sec) [ -37187.3173] [Topology ] . ( 2841 sec) [ -37187.3027] [Alpha ][ 0.528730] . ( 2842 sec) [ -37187.3027] [Topology ] . ( 2848 sec) [ -37187.2942] [Topology ] . ( 2853 sec) [ -37187.2913] [Topology ] . ( 2859 sec) [ -37187.2901] [Topology ] . ( 2865 sec) [ -37187.2896] [Topology ] . ( 2866 sec) [ -37187.2843] [Alpha ][ 0.526608] . ( 2867 sec) [ -37187.2843] [Topology ] . ( 2873 sec) [ -37187.2803] [Topology ] . ( 2879 sec) [ -37187.2789] [Topology ] . ( 2884 sec) [ -37187.2783] [Topology ] . ( 2885 sec) [ -37187.2759] [Alpha ][ 0.525192] . ( 2885 sec) [ -37187.2759] [Topology ] . ( 2891 sec) [ -37187.2737] [Topology ] . ( 2896 sec) [ -37187.2729] [Topology ] . ( 2897 sec) [ -37187.2722] [Alpha ][ 0.524382] . ( 2898 sec) [ -37187.2722] [Topology ] . ( 2903 sec) [ -37187.2709] [Topology ] . ( 2909 sec) [ -37187.2704] [Topology ] . ( 2910 sec) [ -37187.2699] [Alpha ][ 0.523758] . ( 2910 sec) [ -37187.2699] [Topology ] . ( 2916 sec) [ -37187.2691] [Topology ] . ( 2916 sec) [ -37187.2690] [Alpha ][ 0.523234] . Checking for NNIs, optimizing five branches... . ( 2980 sec) [ -37186.8050] [Topology ] . Checking for NNIs, optimizing five branches... . ( 3043 sec) [ -37186.2693] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -37186.269336. . Printing the most likely tree in file 'proteic_M2558_27x1060_2005.phy_phyml_tree.txt'... . Time used 0h51m45s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 1872.79user 0.00system 51:45.52elapsed 60%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps