.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2636_20x1275_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 775 patterns found. (out of a total of 1275 sites) . 495 sites without polymorphism (38.82%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 35Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -19286.6097] [Alpha ][ 0.500960] . ( 2 sec) [ -19264.9501] [ 2961] [depth= 3] . ( 2 sec) [ -19245.5435] [ 2957] [depth= 1] . ( 9 sec) [ -19245.2229] [ 2981] [depth= 2] . ( 9 sec) [ -19229.4762] [ 2970] [depth= 2] . ( 10 sec) [ -19227.5670] [ 2974] [depth= 1] . ( 10 sec) [ -19225.8628] [ 2975] [depth= 1] . ( 11 sec) [ -19223.4171] [ 2979] [depth= 1] . ( 11 sec) [ -19220.0333] [ 2967] [depth= 2] . ( 17 sec) [ -19216.1285] [ 2965] [depth= 1] . ( 24 sec) [ -19212.7160] [ 2959] [depth= 1] . ( 24 sec) [ -19210.3898] [ 2969] [depth= 1] . ( 31 sec) [ -19187.0232] [ 2968] [depth= 2] . ( 88 sec) [ -19185.1723] [ 2963] [depth= 2] . ( 89 sec) [ -19169.9531] [ 2955] [depth= 1] . ( 96 sec) [ -19169.1783] [ 2958] [depth= 1] . ( 97 sec) [ -19155.5835] [ 2955] [depth= 1] . ( 100 sec) [ -19154.3445] [ 2961] [depth= 1] . ( 101 sec) [ -19146.1735] [ 2955] [depth= 1] . ( 114 sec) [ -19143.7447] [ 2959] [depth= 1] . ( 115 sec) [ -19133.2467] [ 2955] [depth= 1] . ( 135 sec) [ -19085.8422] [Branch lengths ] . ( 135 sec) [ -19084.2032] [Alpha ][ 0.458825] . ( 142 sec) [ -19081.9554] [ 2949] [depth= 1] . ( 163 sec) [ -19081.8939] [ 2953] [depth= 1] . ( 202 sec) [ -19076.6928] [ 2952] [depth= 1] . ( 343 sec) [ -19067.6914] [Branch lengths ] . ( 344 sec) [ -19067.6914] [Alpha ][ 0.458366] . ( 567 sec) [ -19066.9385] [Branch lengths ] . ( 567 sec) [ -19066.9385] [Topology ] . ( 570 sec) [ -19066.8473] [Topology ] . ( 573 sec) [ -19066.8124] [Topology ] . ( 576 sec) [ -19066.7935] [Topology ] . ( 579 sec) [ -19066.7830] [Topology ] . ( 581 sec) [ -19066.7772] [Topology ] . ( 584 sec) [ -19066.7739] [Topology ] . ( 585 sec) [ -19066.7704] [Alpha ][ 0.460156] . ( 585 sec) [ -19066.7704] [Topology ] . ( 588 sec) [ -19066.7682] [Topology ] . ( 591 sec) [ -19066.7670] [Topology ] . ( 594 sec) [ -19066.7663] [Topology ] . ( 594 sec) [ -19066.7663] [Alpha ][ 0.460156] . ( 595 sec) [ -19066.7663] [Topology ] . ( 598 sec) [ -19066.7659] [Topology ] . ( 598 sec) [ -19066.7659] [Alpha ][ 0.460156] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -19066.765897. . Printing the most likely tree in file 'proteic_M2636_20x1275_2006.phy_phyml_tree.txt'... . Time used 0h10m24s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 618.23user 0.00system 10:24.74elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps