.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2639_19x331_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 227 patterns found. (out of a total of 331 sites) . 124 sites without polymorphism (37.46%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 10Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -5780.2367] [Alpha ][ 0.500960] . ( 45 sec) [ -5778.9504] [ 954] [depth= 1] . ( 45 sec) [ -5769.9807] [ 944] [depth= 1] . ( 46 sec) [ -5769.1976] [ 941] [depth= 2] . ( 46 sec) [ -5765.3227] [ 943] [depth= 1] . ( 46 sec) [ -5763.6803] [ 944] [depth= 2] . ( 46 sec) [ -5760.0936] [ 944] [depth= 2] . ( 47 sec) [ -5759.3643] [ 945] [depth= 2] . ( 47 sec) [ -5755.7305] [ 941] [depth= 2] . ( 47 sec) [ -5751.4434] [ 940] [depth= 1] . ( 64 sec) [ -5740.1116] [Branch lengths ] . ( 64 sec) [ -5740.0087] [Alpha ][ 0.522125] . ( 151 sec) [ -5739.4770] [Branch lengths ] . ( 151 sec) [ -5739.4770] [Topology ] . ( 151 sec) [ -5739.3401] [Topology ] . ( 152 sec) [ -5739.1464] [Topology ] . ( 153 sec) [ -5739.1155] [Topology ] . ( 154 sec) [ -5739.1066] [Topology ] . ( 155 sec) [ -5739.1034] [Topology ] . ( 156 sec) [ -5739.1021] [Topology ] . ( 157 sec) [ -5739.1015] [Topology ] . ( 157 sec) [ -5739.0607] [Alpha ][ 0.535632] . ( 157 sec) [ -5739.0607] [Topology ] . ( 158 sec) [ -5739.0546] [Topology ] . ( 159 sec) [ -5739.0520] [Topology ] . ( 160 sec) [ -5739.0507] [Topology ] . ( 161 sec) [ -5739.0501] [Topology ] . ( 161 sec) [ -5739.0488] [Alpha ][ 0.538159] . ( 161 sec) [ -5739.0488] [Topology ] . ( 162 sec) [ -5739.0480] [Topology ] . ( 162 sec) [ -5739.0480] [Alpha ][ 0.538698] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5739.047973. . Printing the most likely tree in file 'proteic_M2639_19x331_2006.phy_phyml_tree.txt'... . Time used 0h2m50s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 165.02user 0.00system 2:50.42elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps