.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2640_18x243_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 160 patterns found. (out of a total of 243 sites) . 99 sites without polymorphism (40.74%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 7Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -2517.5928] [Alpha ][ 1.082783] . ( 8 sec) [ -2517.5001] [ 328] [depth= 1] . ( 57 sec) [ -2517.4550] [ 328] [depth= 1] . ( 58 sec) [ -2516.4768] [ 328] [depth= 1] . ( 59 sec) [ -2510.8754] [Branch lengths ] . ( 59 sec) [ -2510.8510] [Alpha ][ 1.132562] . ( 119 sec) [ -2510.7744] [Branch lengths ] . ( 119 sec) [ -2510.7744] [Topology ] . ( 120 sec) [ -2510.7729] [Topology ] . ( 121 sec) [ -2510.7727] [Topology ] . ( 121 sec) [ -2510.7718] [Alpha ][ 1.142182] . ( 121 sec) [ -2510.7718] [Topology ] . ( 121 sec) [ -2510.7717] [Topology ] . ( 122 sec) [ -2510.7717] [Alpha ][ 1.142182] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2510.771721. . Printing the most likely tree in file 'proteic_M2640_18x243_2006.phy_phyml_tree.txt'... . Time used 0h2m6s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 123.67user 0.00system 2:05.91elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps