..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M2641_18x326_2006.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 243 patterns found. (out of a total of 326 sites) 

. 100 sites without polymorphism (30.67%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 10Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [     -5190.7718] [Alpha              ][  0.607649]
. (   14 sec) [     -5190.4764] [  831] [depth=    1]
. (   49 sec) [     -5190.3233] [  829] [depth=    1]
. (   49 sec) [     -5189.8898] [  830] [depth=    1]
. (   49 sec) [     -5187.4550] [  829] [depth=    1]
. (   50 sec) [     -5187.2047] [  830] [depth=    1]
. (   51 sec) [     -5186.1241] [  826] [depth=    1]
. (   62 sec) [     -5165.8169] [Branch lengths     ]
. (   62 sec) [     -5165.2324] [Alpha              ][  0.678849]
. (  110 sec) [     -5164.8412] [  830] [depth=    1]
. (  110 sec) [     -5163.6275] [  829] [depth=    1]
. (  120 sec) [     -5158.3547] [  829] [depth=    2]
. (  125 sec) [     -5153.8689] [Branch lengths     ]
. (  125 sec) [     -5153.8680] [Alpha              ][  0.681664]
. (  201 sec) [     -5153.6122] [Branch lengths     ]
. (  201 sec) [     -5153.6122] [Topology           ]
. (  202 sec) [     -5153.5937] [Topology           ]
. (  204 sec) [     -5153.5875] [Topology           ]
. (  205 sec) [     -5153.5845] [Topology           ]
. (  206 sec) [     -5153.5830] [Topology           ]
. (  207 sec) [     -5153.5822] [Topology           ]
. (  208 sec) [     -5153.5789] [Alpha              ][  0.687440]
. (  208 sec) [     -5153.5789] [Topology           ]
. (  209 sec) [     -5153.5782] [Topology           ]
. (  209 sec) [     -5153.5782] [Alpha              ][  0.687440]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -5153.578202.

. Printing the most likely tree in file 'proteic_M2641_18x326_2006.phy_phyml_tree.txt'...


. Time used 0h3m38s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
203.33user 0.00system 3:38.76elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps