.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2899_25x444_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 365 patterns found. (out of a total of 444 sites) . 112 sites without polymorphism (25.23%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 21Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -10056.3189] [Alpha ][ 0.527413] . ( 24 sec) [ -10055.9442] [ 1783] [depth= 1] . ( 24 sec) [ -10053.8300] [ 1782] [depth= 1] . ( 50 sec) [ -10049.2226] [ 1781] [depth= 1] . ( 50 sec) [ -10048.7893] [ 1785] [depth= 1] . ( 51 sec) [ -10045.8636] [ 1781] [depth= 1] . ( 53 sec) [ -10043.7949] [ 1783] [depth= 1] . ( 62 sec) [ -10037.5562] [ 1779] [depth= 1] . ( 69 sec) [ -10027.9737] [ 1781] [depth= 1] . ( 69 sec) [ -10027.5639] [ 1784] [depth= 1] . ( 69 sec) [ -10026.9130] [ 1782] [depth= 1] . ( 70 sec) [ -10026.2144] [ 1784] [depth= 1] . ( 70 sec) [ -10021.1568] [ 1782] [depth= 1] . ( 70 sec) [ -10013.3564] [ 1782] [depth= 1] . ( 86 sec) [ -10012.6909] [ 1779] [depth= 1] . ( 91 sec) [ -10011.6372] [ 1782] [depth= 1] . ( 92 sec) [ -10006.3388] [ 1782] [depth= 1] . ( 93 sec) [ -10004.2225] [ 1784] [depth= 1] . ( 98 sec) [ -10000.8282] [ 1794] [depth= 1] . ( 99 sec) [ -9999.9850] [ 1784] [depth= 1] . ( 99 sec) [ -9999.2529] [ 1783] [depth= 1] . ( 99 sec) [ -9998.3549] [ 1785] [depth= 1] . ( 100 sec) [ -9997.5444] [ 1777] [depth= 1] . ( 111 sec) [ -9995.6630] [ 1775] [depth= 1] . ( 111 sec) [ -9994.8324] [ 1772] [depth= 1] . ( 111 sec) [ -9991.8466] [ 1775] [depth= 1] . ( 120 sec) [ -9990.7973] [ 1775] [depth= 1] . ( 121 sec) [ -9971.8206] [Branch lengths ] . ( 122 sec) [ -9968.4819] [Alpha ][ 0.630408] . ( 259 sec) [ -9968.0013] [ 1776] [depth= 1] . ( 288 sec) [ -9967.8100] [ 1782] [depth= 1] . ( 289 sec) [ -9967.5844] [ 1780] [depth= 1] . ( 319 sec) [ -9967.3441] [ 1782] [depth= 1] . ( 325 sec) [ -9963.1279] [Branch lengths ] . ( 326 sec) [ -9963.1092] [Alpha ][ 0.639061] . ( 502 sec) [ -9962.7021] [ 1783] [depth= 1] . ( 540 sec) [ -9961.2871] [Branch lengths ] . ( 540 sec) [ -9961.2826] [Alpha ][ 0.643262] . ( 759 sec) [ -9960.7536] [Branch lengths ] . ( 760 sec) [ -9960.7536] [Topology ] . ( 761 sec) [ -9960.6628] [Topology ] . ( 763 sec) [ -9960.6214] [Topology ] . ( 765 sec) [ -9960.5958] [Topology ] . ( 767 sec) [ -9960.5796] [Topology ] . ( 769 sec) [ -9960.5692] [Topology ] . ( 771 sec) [ -9960.5626] [Topology ] . ( 771 sec) [ -9960.5625] [Alpha ][ 0.643906] . ( 772 sec) [ -9960.5625] [Topology ] . ( 773 sec) [ -9960.5582] [Topology ] . ( 775 sec) [ -9960.5555] [Topology ] . ( 777 sec) [ -9960.5538] [Topology ] . ( 779 sec) [ -9960.5527] [Topology ] . ( 781 sec) [ -9960.5519] [Topology ] . ( 781 sec) [ -9960.5519] [Alpha ][ 0.643906] . ( 781 sec) [ -9960.5519] [Topology ] . ( 783 sec) [ -9960.5515] [Topology ] . ( 784 sec) [ -9960.5515] [Alpha ][ 0.643906] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -9960.551470. . Printing the most likely tree in file 'proteic_M2899_25x444_2006.phy_phyml_tree.txt'... . Time used 0h13m18s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 788.48user 0.00system 13:19.19elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps