.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2954_5x1006_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 85 patterns found. (out of a total of 1006 sites) . 959 sites without polymorphism (95.33%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 1Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -3247.1494] [Alpha ][ 0.500960] . ( 1 sec) [ -3244.3685] [Branch lengths ] . ( 1 sec) [ -3244.3685] [Topology ] . ( 1 sec) [ -3244.3664] [Topology ] . ( 1 sec) [ -3244.3661] [Topology ] . ( 1 sec) [ -3244.3539] [Alpha ][ 0.407044] . ( 1 sec) [ -3244.3539] [Topology ] . ( 1 sec) [ -3244.3529] [Topology ] . ( 1 sec) [ -3244.3462] [Topology ] . ( 1 sec) [ -3244.2963] [Topology ] . ( 1 sec) [ -3243.9790] [Topology ] . ( 1 sec) [ -3242.9133] [Topology ] . ( 1 sec) [ -3241.9597] [Topology ] . ( 1 sec) [ -3241.8010] [Alpha ][ 0.813092] . ( 1 sec) [ -3241.8010] [Topology ] . ( 1 sec) [ -3241.7558] [Topology ] . ( 1 sec) [ -3241.7512] [Topology ] . ( 1 sec) [ -3241.7507] [Topology ] . ( 1 sec) [ -3241.7404] [Alpha ][ 1.059983] . ( 1 sec) [ -3241.7404] [Topology ] . ( 2 sec) [ -3241.7401] [Topology ] . ( 2 sec) [ -3241.7401] [Alpha ][ 1.063443] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -3241.740141. . Printing the most likely tree in file 'proteic_M2954_5x1006_2006.phy_phyml_tree.txt'... . Time used 0h0m2s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 2.08user 0.00system 0:02.24elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps