ATGC: EuPathDomains

EuPathDomains: The Divergent Domain DataBase for Eukaryotic Pathogens
Release 2.0 (August 2013)

Original paper: EuPathDomains: The Divergent Domain DataBase for Eukaryotic Pathogens Ghouila A., Terrapon N., Gascuel O., Guerfali F.Z., Laouini D., Maréchal É. and Bréhélin L. Infection, genetics and evolution, 11(4):698-707 (2011).
Updates: Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection Ghouila A., Florent I., Guerfali F.Z., Terrapon N., Laouini D., Ben Yahia S., Gascuel O. and Bréhélin L. Submitted	contacts

Paper

To refer the domain predictions within the EuPathDomains database, please cite:
Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection

Ghouila A., Florent I., Guerfali F.Z., Terrapon N., Laouini D., Ben Yahia S., Gascuel O. and Bréhélin L.

Submitted to Plos Computational Biology
To refer the EuPathDomains database, please cite:
EuPathDomains: The divergent domain database for eukaryotic pathogens.

Ghouila A., Terrapon N., Gascuel O., Guerfali F.Z., Laouini D., Maréchal É. and Bréhélin L.

Infection, Genetics and Evolution, 11(4):698-707 (2011).
To refer the CODD procedure, please cite:

"Detection of new protein domains using co-occurrence: application to Plasmodium falciparum."

Terrapon N, Gascuel O, Maréchal E, Bréehélin L.

Bioinformatics, 25(23):3077-8 (2009).
Supplementary Figures and Tables

Contacts

For any questions about the approach, the database or the results, you can contact :

Amel GHOUILA
LIRMM, Montpellier, France.
Nicolas TERRAPON
AFMB, Marseille, France.
Personal Webpage
Laurent BRÉHÉLIN
LIRMM, Montpellier, France.
Personal Webpage