Accounting for Solvent Accessibility and Secondary Structure in Protein Phylogenetics is Highly Beneficial.

Le S.Q., Gascuel O.
Systematic Biology, 59(3): 277-287, 2010


Online appendix (pdf):
  1. GTR rate matrices
  2. Comparison of CONF/LG, PART and MIX
  3. Experiments with PASSML


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