ATGC: SMS

SMS: Smart Model Selection in PhyML

Vincent Lefort, Jean-Emmanuel Longueville, Olivier Gascuel

Molecular Biology and Evolution, 34(9):2422-2424, 2017.

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How it works

.pdf

Source code

Version 2.0 .zip.

SMS tests on 500 DNA and 500 protein MSA

SMS vs Exhaustive method :
- .ods
- .xlsx

SMS vs ModelTest and ProtTest :
- .ods
- .xlsx

SMS tests on 50 DNA and 50 protein MSA

SMS vs Exhaustive method :
- .ods
- .xlsx

SMS vs ModelTest and ProtTest :
- .ods
- .xlsx

Data sets

PhyML web server anonymized users data set (500 DNA and 500 protein MSA) : .zip
PhyML 3.0 data set (50 DNA and 50 protein MSA) : Medium size data set