Maximum likelihood estimation of amino acid replacement rate matrix
Cuong Cao Dang, Vincent Lefort, Vinh Sy Le, Quang Si Le, and Olivier Gascuel.
Bioinformatics. 2011, 27(19):2758-60.
Paper
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Replacement Matrix:
Dang C.C., Lefort V., Le V.S., Le Q.S., Gascuel O.
Bioinformatics. 2011, 27(19):2758-60.
Related papers
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FLU model:
Dang C.C., Le Q.S., Gascuel O., Le V.S.
BMC Evolutionary Biology, 10:99, 2010.
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PhyML 3.0:
Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O.
Systematic Biology, 59(3):307-21, 2010.
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LG model:
Le S.Q., Gascuel O.
Molecular Biology and Evolution, 25(7):1307-20, 2008.
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XRate:
Klosterman P.S., Uzilov A.V., Bendaña Y.R., Bradley R.K., Chao S., Kosiol C., Goldman N., Holmes I.
BMC Bioinformatics, 7:428, 2006.
Contacts
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