ATGC: NGS - Next Generation Sequencing

Next Generation Sequencing (NGS)

The ATGC platform is pleased to propose innovative bioinformatics services for analysing High-Throughput Sequencing (HTS), also called Next Generation Sequencing (NGS), data. The platform is equipped with a medium computing server and disk server. Given as input your sequence data, we can advise you on or perform analysis such as:

Translatome: translational regulation of gene expression and data mining (Ribo-seq)
Transcriptome: transcriptional Differential Gene Expression analysis (RNA-seq)
Transcriptome: assembly (RNA-seq)
Genome: prediction of polymorphisms (DNA-seq)
Genome: assembly (DNA-seq)
Long reads: hybrid error correction

Selected examples of collaborative projects, with topic and related publications are listed here.

The platform also offers free access to software and services for use and/or download on your computers, and proposes training sessions regarding High-Throughput Sequencing data analyses.

ATGC belongs, as a founding platform, to the two main platform networks in France: the Institut Français de Bioinformatique (IFB) and France Génomique (FG). ATGC is registered in the platform catalog of from Aviesan, and Cancéropôle Grand Sud Ouest.

Contact:
To set up a project please contact the team through: atgc-hts@lirmm.fr