Next Generation Sequencing (NGS)
Results and publications
Here is a short table of projects to which ATGC NGS has been collaborating to.
Collaborations and services often end up in co-publications.
Thanks to all those groups for nice collaborations.
Collaborator : main collaborator and his lab. Other collaborators for the same study are in the authors list of the publication.
Type : genomics (G), transcriptomics (T), translatomics (R)
Species |
Type |
Publication |
Journal |
doi |
Year |
Aim / topic |
Collaborator |
Lab / Univ |
Mouse |
T-R |
Oldfield et al. |
Nature Communications |
doi |
2019 |
transcription initiation regulation |
A. Oldfield |
NIEHS, US |
Algae O. tauri |
G |
Blanc-Mathieu et al. |
Science Advances |
doi |
2017 |
genome variability in population |
G. Piganeau |
Arago UPMC |
T. cacao L. |
G |
Argout et al. |
BMC Genomics |
doi |
2017 |
genome re-sequencing & assembly |
X. Argout |
CIRAD |
Malaria parasite |
G |
Diwedi et al |
Malaria J. |
doi |
2017 |
genomic variability and resistance |
E. Cornillot |
IRCM |
M. truncatula |
T |
Damiani et al. |
Frontiers Plant Sci. |
doi |
2016 |
root hair specific transcriptome response |
H. Sentenac |
INRA |
Human |
G |
Keyser et al. |
Phil. Trans. Royal Soc. B |
doi |
2015 |
human genetics, anthropobiology |
C. Keyser |
AMIS U. Stras. |
Algae O. tauri |
G |
Blanc-Mathieu et al. |
BMC Genomics |
doi |
2014 |
genome re-sequencing & assembly |
G. Piganeau |
Arago UPMC |
Mouse |
G |
Buard et al. |
PLOS One |
doi |
2014 |
DSB and recombination control |
B. de Massy |
IGH |
Human/mouse |
G |
Cayrou et al |
Genome Research |
doi |
2011 |
predict DNA replication origins |
M. Mechali |
IGH |
Sturgeons |
G |
Shao et al. |
J. of Genetics |
link |
2011 |
phylogenetics of sturgeons |
P. Berrebi |
ISEM |
Radish |
G |
Hernandez et al. |
BMC Plant Biology |
doi |
2010 |
fertility restorer genetics |
F. Budar |
INRA Versailles |
Mouse |
G |
Bonhomme et al. |
Genome Biology |
doi |
2007 |
population genomics in subspecies |
F. Bonhomme |
ISEM |
Human mouse |
T |
Rivals et al |
Nucleic Acids Res. |
doi |
2007 |
transcript identification |
J. Marti |
IGH |