ATGC: Phylogenetic models

New phylogenetic models for the evolution of proteins.

LG model

"An improved general amino-acid replacement matrix."

Le S.Q., Gascuel O.

Molecular Biology and Evolution, 2008 Jul;25(7):1307-20.
CAT model

"Empirical profile mixture models for phylogenetic reconstruction."

Le S.Q., Gascuel O., Lartillot N.

Bioinformatics, 2008 Oct 15;24(20):2317-23.
Mixture models

"Phylogenetic Mixture Models for Proteins."

Le S.Q., Lartillot N., Gascuel O.

Philos. Trans. R. Soc. Lond. B. Biol. Sci., 2008 Oct 7.
Structure-based models

"Accounting for Solvent Accessibility and Secondary Structure in Protein Phylogenetics is Highly Beneficial."

Le S.Q., Gascuel O.

Systematic Biology, 59(3): 277-287, 2010.