Configuration file PHYML_3.0_NNI PHYML_3.0_SPR RAXML_CAT FAST_TREE
Nucleic LogLks: Average = 3.21 ; Median = 3.0 Average = 1.36 ; Median = 1.0 Average = 2.19 ; Median = 2.0 Average = 3.24 ; Median = 3.0
Nucleic Times: Average = 3.16 ; Median = 3.0 Average = 3.83 ; Median = 4.0 Average = 1.43 ; Median = 1.5 Average = 1.58 ; Median = 1.5
Average RF distance: 0.2711 0.0692 0.2058 0.2685
Nucleic #Delta>5.0: 33.0 1.0 7.0 35.0
Nucleic #P-Value<0.05: 5.0 0.0 0.0 5.0
nucleic_M2572_191x990_2006.phy Time spent : 1m 5s ; Time Rank =2.5
LogLk = -3508.070176 ; LogLK Rank =2.0
RF distance =0.436
SH with best : P-value = 1.0 ; Output
Time spent : 9m 15s ; Time Rank =4.0
LogLk = -3508.007923 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 2s ; Time Rank =2.5
LogLk = -3508.316352 ; LogLK Rank =3.0
RF distance =0.728
SH with best : P-value = 0.92 ; Output
Time spent : 27s ; Time Rank =1.0
LogLk = -3513.285916 ; LogLK Rank =4.0
RF distance =0.563
SH with best : P-value = 0.587 ; Output
nucleic_M2587_117x1910_2006.phy Time spent : 13m 47s ; Time Rank =3.0
LogLk = -16136.251048 ; LogLK Rank =4.0
RF distance =0.368
SH with best : P-value = 0.0 ; Output
Time spent : 39m 38s ; Time Rank =4.0
LogLk = -15969.512094 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 2m 50s ; Time Rank =1.5
LogLk = -15974.511981 ; LogLK Rank =2.0
RF distance =0.175
SH with best : P-value = 0.71 ; Output
Time spent : 3m 9s ; Time Rank =1.5
LogLk = -16053.015455 ; LogLK Rank =3.0
RF distance =0.359
SH with best : P-value = 0.0020 ; Output
nucleic_M2564_142x1130_2006.phy Time spent : 8m 35s ; Time Rank =3.0
LogLk = -20464.632592 ; LogLK Rank =4.0
RF distance =0.345
SH with best : P-value = 0.045 ; Output
Time spent : 22m 14s ; Time Rank =4.0
LogLk = -20397.29492 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 3m 0s ; Time Rank =2.0
LogLk = -20403.831186 ; LogLK Rank =2.0
RF distance =0.237
SH with best : P-value = 0.793 ; Output
Time spent : 2m 19s ; Time Rank =1.0
LogLk = -20449.207243 ; LogLK Rank =3.0
RF distance =0.323
SH with best : P-value = 0.091 ; Output
nucleic_M2792_166x812_2006.phy Time spent : 5m 34s ; Time Rank =3.0
LogLk = -10567.157839 ; LogLK Rank =3.0
RF distance =0.306
SH with best : P-value = 0.599 ; Output
Time spent : 16m 45s ; Time Rank =4.0
LogLk = -10554.781167 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 54s ; Time Rank =1.5
LogLk = -10564.0155 ; LogLK Rank =2.0
RF distance =0.294
SH with best : P-value = 0.704 ; Output
Time spent : 1m 36s ; Time Rank =1.5
LogLk = -10568.925851 ; LogLK Rank =4.0
RF distance =0.276
SH with best : P-value = 0.506 ; Output
nucleic_M2707_115x1677_2006.phy Time spent : 10m 38s ; Time Rank =3.0
LogLk = -9797.791236 ; LogLK Rank =4.0
RF distance =0.535
SH with best : P-value = 0.0070 ; Output
Time spent : 32m 27s ; Time Rank =4.0
LogLk = -9719.716553 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 51s ; Time Rank =1.0
LogLk = -9728.416054 ; LogLK Rank =2.0
RF distance =0.464
SH with best : P-value = 0.677 ; Output
Time spent : 2m 57s ; Time Rank =2.0
LogLk = -9775.458881 ; LogLK Rank =3.0
RF distance =0.446
SH with best : P-value = 0.015 ; Output
nucleic_M2623_139x1044_2006.phy Time spent : 33m 33s ; Time Rank =3.5
LogLk = -45996.18486 ; LogLK Rank =4.0
RF distance =0.257
SH with best : P-value = 0.0 ; Output
Time spent : 33m 56s ; Time Rank =3.5
LogLk = -45861.025631 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 5m 39s ; Time Rank =2.0
LogLk = -45864.007642 ; LogLK Rank =2.0
RF distance =0.125
SH with best : P-value = 0.817 ; Output
Time spent : 3m 35s ; Time Rank =1.0
LogLk = -45958.219621 ; LogLK Rank =3.0
RF distance =0.235
SH with best : P-value = 0.0 ; Output
nucleic_M2916_143x897_2006.phy Time spent : 3m 55s ; Time Rank =3.0
LogLk = -3492.531436 ; LogLK Rank =4.0
RF distance =0.664
SH with best : P-value = 0.334 ; Output
Time spent : 13m 45s ; Time Rank =4.0
LogLk = -3461.151501 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 54s ; Time Rank =2.0
LogLk = -3462.035005 ; LogLK Rank =2.0
RF distance =0.521
SH with best : P-value = 0.933 ; Output
Time spent : 37s ; Time Rank =1.0
LogLk = -3486.461766 ; LogLK Rank =3.0
RF distance =0.671
SH with best : P-value = 0.474 ; Output
nucleic_M2711_123x1181_2006.phy Time spent : 4m 1s ; Time Rank =3.0
LogLk = -10670.412606 ; LogLK Rank =3.0
RF distance =0.358
SH with best : P-value = 0.25 ; Output
Time spent : 17m 46s ; Time Rank =4.0
LogLk = -10656.188722 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 21s ; Time Rank =1.5
LogLk = -10656.311293 ; LogLK Rank =2.0
RF distance =0.375
SH with best : P-value = 0.998 ; Output
Time spent : 1m 29s ; Time Rank =1.5
LogLk = -10674.777339 ; LogLK Rank =4.0
RF distance =0.383
SH with best : P-value = 0.264 ; Output
nucleic_M2933_99x1634_2006.phy Time spent : 8m 51s ; Time Rank =3.0
LogLk = -7648.62354 ; LogLK Rank =4.0
RF distance =0.52
SH with best : P-value = 0.105 ; Output
Time spent : 12m 30s ; Time Rank =4.0
LogLk = -7618.525716 ; LogLK Rank =2.0
RF distance =0.427
SH with best : P-value = 0.986 ; Output
Time spent : 1m 43s ; Time Rank =2.0
LogLk = -7618.14118 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 18s ; Time Rank =1.0
LogLk = -7641.226044 ; LogLK Rank =3.0
RF distance =0.51
SH with best : P-value = 0.244 ; Output
nucleic_M2606_110x1206_2006.phy Time spent : 8m 54s ; Time Rank =3.5
LogLk = -26952.70718 ; LogLK Rank =3.0
RF distance =0.168
SH with best : P-value = 0.729 ; Output
Time spent : 7m 27s ; Time Rank =3.5
LogLk = -26945.397843 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 48s ; Time Rank =1.5
LogLk = -26948.56925 ; LogLK Rank =2.0
RF distance =0.177
SH with best : P-value = 0.894 ; Output
Time spent : 1m 52s ; Time Rank =1.5
LogLk = -26982.505153 ; LogLK Rank =4.0
RF distance =0.186
SH with best : P-value = 0.146 ; Output
nucleic_M2752_106x1292_2006.phy Time spent : 1m 38s ; Time Rank =3.0
LogLk = -7872.39297 ; LogLK Rank =4.0
RF distance =0.174
SH with best : P-value = 0.613 ; Output
Time spent : 4m 34s ; Time Rank =4.0
LogLk = -7869.077264 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 33s ; Time Rank =1.5
LogLk = -7869.508583 ; LogLK Rank =2.0
RF distance =0.233
SH with best : P-value = 0.974 ; Output
Time spent : 41s ; Time Rank =1.5
LogLk = -7871.028667 ; LogLK Rank =3.0
RF distance =0.174
SH with best : P-value = 0.798 ; Output
nucleic_M2946_110x1003_2006.phy Time spent : 4m 36s ; Time Rank =3.0
LogLk = -17034.469256 ; LogLK Rank =3.0
RF distance =0.186
SH with best : P-value = 0.111 ; Output
Time spent : 7m 12s ; Time Rank =4.0
LogLk = -16992.973865 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 44s ; Time Rank =1.5
LogLk = -17001.680679 ; LogLK Rank =2.0
RF distance =0.14
SH with best : P-value = 0.673 ; Output
Time spent : 1m 24s ; Time Rank =1.5
LogLk = -17064.030302 ; LogLK Rank =4.0
RF distance =0.271
SH with best : P-value = 0.016 ; Output
nucleic_M2770_86x1628_2006.phy Time spent : 1m 26s ; Time Rank =3.0
LogLk = -5823.947839 ; LogLK Rank =4.0
RF distance =0.204
SH with best : P-value = 0.278 ; Output
Time spent : 4m 21s ; Time Rank =4.0
LogLk = -5809.631777 ; LogLK Rank =2.0
RF distance =0.18
SH with best : P-value = 0.935 ; Output
Time spent : 39s ; Time Rank =1.5
LogLk = -5808.65268 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 39s ; Time Rank =1.5
LogLk = -5815.731591 ; LogLK Rank =3.0
RF distance =0.18
SH with best : P-value = 0.591 ; Output
nucleic_M2786_104x1051_2006.phy Time spent : 5m 54s ; Time Rank =3.0
LogLk = -15669.865032 ; LogLK Rank =4.0
RF distance =0.158
SH with best : P-value = 0.64 ; Output
Time spent : 8m 1s ; Time Rank =4.0
LogLk = -15660.385831 ; LogLK Rank =2.0
RF distance =0.108
SH with best : P-value = 0.951 ; Output
Time spent : 1m 22s ; Time Rank =1.0
LogLk = -15659.1675 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 53s ; Time Rank =2.0
LogLk = -15665.194341 ; LogLK Rank =3.0
RF distance =0.188
SH with best : P-value = 0.798 ; Output
nucleic_M2928_81x1651_2006.phy Time spent : 1m 49s ; Time Rank =3.0
LogLk = -6689.70859 ; LogLK Rank =2.0
RF distance =0.358
SH with best : P-value = 1.0 ; Output
Time spent : 4m 34s ; Time Rank =4.0
LogLk = -6689.658291 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 48s ; Time Rank =1.5
LogLk = -6691.767807 ; LogLK Rank =4.0
RF distance =0.474
SH with best : P-value = 0.679 ; Output
Time spent : 47s ; Time Rank =1.5
LogLk = -6690.6632 ; LogLK Rank =3.0
RF distance =0.461
SH with best : P-value = 0.69 ; Output
nucleic_M2944_80x1495_2006.phy Time spent : 2m 27s ; Time Rank =3.0
LogLk = -9023.329451 ; LogLK Rank =3.0
RF distance =0.194
SH with best : P-value = 0.0070 ; Output
Time spent : 5m 34s ; Time Rank =4.0
LogLk = -8989.652837 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 38s ; Time Rank =1.0
LogLk = -8991.313885 ; LogLK Rank =2.0
RF distance =0.116
SH with best : P-value = 0.872 ; Output
Time spent : 49s ; Time Rank =2.0
LogLk = -9027.993405 ; LogLK Rank =4.0
RF distance =0.207
SH with best : P-value = 0.014 ; Output
nucleic_M2975_93x982_2006.phy Time spent : 4m 6s ; Time Rank =3.0
LogLk = -12308.833763 ; LogLK Rank =4.0
RF distance =0.188
SH with best : P-value = 0.144 ; Output
Time spent : 7m 17s ; Time Rank =4.0
LogLk = -12285.612068 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 25s ; Time Rank =1.5
LogLk = -12286.857229 ; LogLK Rank =2.0
RF distance =0.077
SH with best : P-value = 0.75 ; Output
Time spent : 1m 9s ; Time Rank =1.5
LogLk = -12308.655558 ; LogLK Rank =3.0
RF distance =0.155
SH with best : P-value = 0.102 ; Output
nucleic_M2845_68x1715_2006.phy Time spent : 2m 24s ; Time Rank =3.0
LogLk = -11361.307799 ; LogLK Rank =3.0
RF distance =0.076
SH with best : P-value = 0.76 ; Output
Time spent : 3m 27s ; Time Rank =4.0
LogLk = -11358.079001 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 41s ; Time Rank =1.0
LogLk = -11363.054058 ; LogLK Rank =4.0
RF distance =0.107
SH with best : P-value = 0.732 ; Output
Time spent : 57s ; Time Rank =2.0
LogLk = -11361.236191 ; LogLK Rank =2.0
RF distance =0.107
SH with best : P-value = 0.761 ; Output
nucleic_M2932_68x1712_2006.phy Time spent : 7m 18s ; Time Rank =3.0
LogLk = -14929.609064 ; LogLK Rank =3.0
RF distance =0.292
SH with best : P-value = 0.384 ; Output
Time spent : 11m 56s ; Time Rank =4.0
LogLk = -14921.302358 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 44s ; Time Rank =1.5
LogLk = -14924.742678 ; LogLK Rank =2.0
RF distance =0.246
SH with best : P-value = 0.525 ; Output
Time spent : 2m 1s ; Time Rank =1.5
LogLk = -14940.345569 ; LogLK Rank =4.0
RF distance =0.307
SH with best : P-value = 0.126 ; Output
nucleic_M2716_79x1252_2006.phy Time spent : 1m 34s ; Time Rank =3.0
LogLk = -3363.383651 ; LogLK Rank =4.0
RF distance =0.657
SH with best : P-value = 0.103 ; Output
Time spent : 3m 53s ; Time Rank =4.0
LogLk = -3344.747935 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 22s ; Time Rank =1.5
LogLk = -3345.571446 ; LogLK Rank =2.0
RF distance =0.723
SH with best : P-value = 0.714 ; Output
Time spent : 26s ; Time Rank =1.5
LogLk = -3361.14863 ; LogLK Rank =3.0
RF distance =0.789
SH with best : P-value = 0.12 ; Output
nucleic_M2708_78x1107_2006.phy Time spent : 4m 27s ; Time Rank =3.5
LogLk = -6540.55588 ; LogLK Rank =4.0
RF distance =0.386
SH with best : P-value = 0.046 ; Output
Time spent : 5m 1s ; Time Rank =3.5
LogLk = -6527.666726 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 46s ; Time Rank =1.0
LogLk = -6529.590083 ; LogLK Rank =2.0
RF distance =0.413
SH with best : P-value = 0.884 ; Output
Time spent : 59s ; Time Rank =2.0
LogLk = -6532.946645 ; LogLK Rank =3.0
RF distance =0.48
SH with best : P-value = 0.447 ; Output
nucleic_M2922_77x1101_2006.phy Time spent : 1m 4s ; Time Rank =3.0
LogLk = -3036.891188 ; LogLK Rank =3.0
RF distance =0.527
SH with best : P-value = 0.514 ; Output
Time spent : 2m 36s ; Time Rank =4.0
LogLk = -3033.80493 ; LogLK Rank =2.0
RF distance =0.486
SH with best : P-value = 0.343 ; Output
Time spent : 30s ; Time Rank =2.0
LogLk = -3029.588305 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 17s ; Time Rank =1.0
LogLk = -3040.326349 ; LogLK Rank =4.0
RF distance =0.486
SH with best : P-value = 0.122 ; Output
nucleic_M2913_81x897_2006.phy Time spent : 1m 13s ; Time Rank =3.0
LogLk = -2435.786324 ; LogLK Rank =4.0
RF distance =0.717
SH with best : P-value = 0.363 ; Output
Time spent : 6m 16s ; Time Rank =4.0
LogLk = -2409.417748 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 30s ; Time Rank =2.0
LogLk = -2410.084203 ; LogLK Rank =2.0
RF distance =0.692
SH with best : P-value = 0.961 ; Output
Time spent : 15s ; Time Rank =1.0
LogLk = -2428.113767 ; LogLK Rank =3.0
RF distance =0.641
SH with best : P-value = 0.211 ; Output
nucleic_M2901_56x1802_2006.phy Time spent : 2m 2s ; Time Rank =3.0
LogLk = -7868.302081 ; LogLK Rank =4.0
RF distance =0.49
SH with best : P-value = 0.153 ; Output
Time spent : 4m 31s ; Time Rank =4.0
LogLk = -7823.712571 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 0s ; Time Rank =1.0
LogLk = -7826.518304 ; LogLK Rank =2.0
RF distance =0.339
SH with best : P-value = 0.846 ; Output
Time spent : 1m 17s ; Time Rank =2.0
LogLk = -7862.000626 ; LogLK Rank =3.0
RF distance =0.433
SH with best : P-value = 0.228 ; Output
nucleic_M2627_54x1915_2006.phy Time spent : 8m 0s ; Time Rank =4.0
LogLk = -35258.014465 ; LogLK Rank =3.0
RF distance =0.039
SH with best : P-value = 0.552 ; Output
Time spent : 5m 1s ; Time Rank =3.0
LogLk = -35253.127376 ; LogLK Rank =2.0
RF distance =0.0
SH with best : P-value = 1.0 ; Output
Time spent : 1m 0s ; Time Rank =1.0
LogLk = -35253.125418 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 48s ; Time Rank =2.0
LogLk = -35258.203115 ; LogLK Rank =4.0
RF distance =0.039
SH with best : P-value = 0.476 ; Output
nucleic_M2588_68x1196_2006.phy Time spent : 3m 45s ; Time Rank =3.0
LogLk = -12027.778921 ; LogLK Rank =3.0
RF distance =0.353
SH with best : P-value = 0.568 ; Output
Time spent : 4m 53s ; Time Rank =4.0
LogLk = -12022.680231 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 0s ; Time Rank =1.0
LogLk = -12025.016268 ; LogLK Rank =2.0
RF distance =0.369
SH with best : P-value = 0.752 ; Output
Time spent : 1m 29s ; Time Rank =2.0
LogLk = -12029.060878 ; LogLK Rank =4.0
RF distance =0.415
SH with best : P-value = 0.276 ; Output
nucleic_M2772_77x900_2006.phy Time spent : 2m 5s ; Time Rank =3.0
LogLk = -7199.090001 ; LogLK Rank =3.0
RF distance =0.175
SH with best : P-value = 0.604 ; Output
Time spent : 3m 29s ; Time Rank =4.0
LogLk = -7193.307136 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 36s ; Time Rank =1.5
LogLk = -7193.872816 ; LogLK Rank =2.0
RF distance =0.121
SH with best : P-value = 0.95 ; Output
Time spent : 35s ; Time Rank =1.5
LogLk = -7205.701859 ; LogLK Rank =4.0
RF distance =0.256
SH with best : P-value = 0.411 ; Output
nucleic_M2771_52x1896_2006.phy Time spent : 2m 27s ; Time Rank =3.0
LogLk = -13998.848836 ; LogLK Rank =3.0
RF distance =0.183
SH with best : P-value = 0.46 ; Output
Time spent : 3m 36s ; Time Rank =4.0
LogLk = -13993.226072 ; LogLK Rank =2.0
RF distance =0.163
SH with best : P-value = 0.587 ; Output
Time spent : 46s ; Time Rank =1.0
LogLk = -13986.096944 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 2s ; Time Rank =2.0
LogLk = -14018.845475 ; LogLK Rank =4.0
RF distance =0.265
SH with best : P-value = 0.072 ; Output
nucleic_M2565_51x1951_2006.phy Time spent : 2m 5s ; Time Rank =3.5
LogLk = -14659.474973 ; LogLK Rank =4.0
RF distance =0.104
SH with best : P-value = 0.758 ; Output
Time spent : 2m 19s ; Time Rank =3.5
LogLk = -14657.766539 ; LogLK Rank =2.0
RF distance =0.0
Output
Time spent : 36s ; Time Rank =1.5
LogLk = -14657.767258 ; LogLK Rank =2.0
RF distance =0.02
SH with best : P-value = 1.0 ; Output
Time spent : 45s ; Time Rank =1.5
LogLk = -14657.766799 ; LogLK Rank =2.0
RF distance =0.041
SH with best : P-value = 1.0 ; Output
nucleic_M2826_60x1398_2006.phy Time spent : 2m 18s ; Time Rank =3.0
LogLk = -14368.638364 ; LogLK Rank =4.0
RF distance =0.385
SH with best : P-value = 0.187 ; Output
Time spent : 4m 19s ; Time Rank =4.0
LogLk = -14327.93025 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 43s ; Time Rank =1.5
LogLk = -14334.288624 ; LogLK Rank =2.0
RF distance =0.315
SH with best : P-value = 0.782 ; Output
Time spent : 36s ; Time Rank =1.5
LogLk = -14354.874642 ; LogLK Rank =3.0
RF distance =0.438
SH with best : P-value = 0.315 ; Output
nucleic_M2599_66x1137_2006.phy Time spent : 9s ; Time Rank =3.0
LogLk = -2163.487012 ; LogLK Rank =3.5
RF distance =0.492
SH with best : P-value = 0.633 ; Output
Time spent : 1m 35s ; Time Rank =4.0
LogLk = -2163.487251 ; LogLK Rank =3.5
RF distance =0.698
SH with best : P-value = 0.637 ; Output
Time spent : 8s ; Time Rank =1.5
LogLk = -2163.063954 ; LogLK Rank =2.0
RF distance =0.587
SH with best : P-value = 1.0 ; Output
Time spent : 6s ; Time Rank =1.5
LogLk = -2163.057844 ; LogLK Rank =1.0
RF distance =0.0
Output
nucleic_M2566_73x918_2006.phy Time spent : 2m 2s ; Time Rank =3.0
LogLk = -12018.191571 ; LogLK Rank =4.0
RF distance =0.1
SH with best : P-value = 0.273 ; Output
Time spent : 3m 4s ; Time Rank =4.0
LogLk = -12000.997416 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 47s ; Time Rank =1.5
LogLk = -12002.178455 ; LogLK Rank =2.0
RF distance =0.042
SH with best : P-value = 0.899 ; Output
Time spent : 42s ; Time Rank =1.5
LogLk = -12015.884886 ; LogLK Rank =3.0
RF distance =0.185
SH with best : P-value = 0.373 ; Output
nucleic_M2945_62x1271_2006.phy Time spent : 8m 7s ; Time Rank =3.5
LogLk = -35124.620116 ; LogLK Rank =3.0
RF distance =0.186
SH with best : P-value = 0.286 ; Output
Time spent : 8m 5s ; Time Rank =3.5
LogLk = -35105.929217 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 1m 24s ; Time Rank =1.0
LogLk = -35116.203975 ; LogLK Rank =2.0
RF distance =0.101
SH with best : P-value = 0.466 ; Output
Time spent : 1m 50s ; Time Rank =2.0
LogLk = -35133.471561 ; LogLK Rank =4.0
RF distance =0.254
SH with best : P-value = 0.254 ; Output
nucleic_M2662_60x1348_2006.phy Time spent : 2m 15s ; Time Rank =3.0
LogLk = -12347.845692 ; LogLK Rank =2.0
RF distance =0.035
SH with best : P-value = 0.891 ; Output
Time spent : 3m 10s ; Time Rank =4.0
LogLk = -12346.290635 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 51s ; Time Rank =1.5
LogLk = -12352.592232 ; LogLK Rank =4.0
RF distance =0.105
SH with best : P-value = 0.677 ; Output
Time spent : 44s ; Time Rank =1.5
LogLk = -12348.349226 ; LogLK Rank =3.0
RF distance =0.07
SH with best : P-value = 0.887 ; Output
nucleic_M2661_66x1027_2006.phy Time spent : 1m 55s ; Time Rank =3.5
LogLk = -9131.553329 ; LogLK Rank =2.0
RF distance =0.095
SH with best : P-value = 1.0 ; Output
Time spent : 2m 20s ; Time Rank =3.5
LogLk = -9131.553478 ; LogLK Rank =2.0
RF distance =0.126
SH with best : P-value = 1.0 ; Output
Time spent : 29s ; Time Rank =1.0
LogLk = -9131.554663 ; LogLK Rank =4.0
RF distance =0.142
SH with best : P-value = 1.0 ; Output
Time spent : 37s ; Time Rank =2.0
LogLk = -9131.553098 ; LogLK Rank =2.0
RF distance =0.0
Output
nucleic_M2733_60x1207_2006.phy Time spent : 1m 50s ; Time Rank =3.5
LogLk = -10947.611398 ; LogLK Rank =3.0
RF distance =0.122
SH with best : P-value = 0.501 ; Output
Time spent : 2m 8s ; Time Rank =3.5
LogLk = -10940.259448 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 38s ; Time Rank =1.5
LogLk = -10942.154695 ; LogLK Rank =2.0
RF distance =0.122
SH with best : P-value = 0.8 ; Output
Time spent : 38s ; Time Rank =1.5
LogLk = -10950.296375 ; LogLK Rank =4.0
RF distance =0.263
SH with best : P-value = 0.565 ; Output
nucleic_M2738_53x1538_2006.phy Time spent : 2m 34s ; Time Rank =3.0
LogLk = -13910.138779 ; LogLK Rank =2.0
RF distance =0.08
SH with best : P-value = 0.892 ; Output
Time spent : 3m 25s ; Time Rank =4.0
LogLk = -13908.535048 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 46s ; Time Rank =1.5
LogLk = -13911.990432 ; LogLK Rank =3.5
RF distance =0.1
SH with best : P-value = 0.748 ; Output
Time spent : 55s ; Time Rank =1.5
LogLk = -13911.99054 ; LogLK Rank =3.5
RF distance =0.1
SH with best : P-value = 0.751 ; Output
nucleic_M2567_64x1044_2006.phy Time spent : 1m 34s ; Time Rank =3.5
LogLk = -6791.955578 ; LogLK Rank =1.5
RF distance =0.0
Output
Time spent : 1m 46s ; Time Rank =3.5
LogLk = -6791.956055 ; LogLK Rank =1.5
RF distance =0.114
SH with best : P-value = 1.0 ; Output
Time spent : 21s ; Time Rank =1.5
LogLk = -6792.25917 ; LogLK Rank =3.5
RF distance =0.065
SH with best : P-value = 0.985 ; Output
Time spent : 25s ; Time Rank =1.5
LogLk = -6792.258849 ; LogLK Rank =3.5
RF distance =0.049
SH with best : P-value = 0.978 ; Output
nucleic_M2675_51x1537_2006.phy Time spent : 1m 35s ; Time Rank =3.5
LogLk = -7880.721493 ; LogLK Rank =4.0
RF distance =0.27
SH with best : P-value = 0.124 ; Output
Time spent : 1m 56s ; Time Rank =3.5
LogLk = -7855.805506 ; LogLK Rank =1.5
RF distance =0.0
Output
Time spent : 21s ; Time Rank =1.0
LogLk = -7855.805847 ; LogLK Rank =1.5
RF distance =0.145
SH with best : P-value = 1.0 ; Output
Time spent : 32s ; Time Rank =2.0
LogLk = -7879.317942 ; LogLK Rank =3.0
RF distance =0.229
SH with best : P-value = 0.095 ; Output
nucleic_M2879_70x800_2006.phy Time spent : 1m 55s ; Time Rank =3.0
LogLk = -5789.61381 ; LogLK Rank =4.0
RF distance =0.268
SH with best : P-value = 0.293 ; Output
Time spent : 4m 16s ; Time Rank =4.0
LogLk = -5782.167774 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 28s ; Time Rank =1.5
LogLk = -5782.416607 ; LogLK Rank =2.0
RF distance =0.134
SH with best : P-value = 0.951 ; Output
Time spent : 33s ; Time Rank =1.5
LogLk = -5785.153762 ; LogLK Rank =3.0
RF distance =0.283
SH with best : P-value = 0.637 ; Output
nucleic_M2600_69x814_2006.phy Time spent : 9s ; Time Rank =3.0
LogLk = -1755.957162 ; LogLK Rank =4.0
RF distance =0.545
SH with best : P-value = 0.652 ; Output
Time spent : 1m 4s ; Time Rank =4.0
LogLk = -1752.93643 ; LogLK Rank =2.0
RF distance =0.56
SH with best : P-value = 1.0 ; Output
Time spent : 3s ; Time Rank =1.0
LogLk = -1754.729064 ; LogLK Rank =3.0
RF distance =0.5
SH with best : P-value = 0.765 ; Output
Time spent : 6s ; Time Rank =2.0
LogLk = -1752.93535 ; LogLK Rank =1.0
RF distance =0.0
Output
nucleic_M2696_50x1472_2006.phy Time spent : 1m 6s ; Time Rank =3.0
LogLk = -6170.472231 ; LogLK Rank =4.0
RF distance =0.212
SH with best : P-value = 0.703 ; Output
Time spent : 2m 6s ; Time Rank =4.0
LogLk = -6165.384557 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 22s ; Time Rank =1.5
LogLk = -6166.039743 ; LogLK Rank =2.0
RF distance =0.191
SH with best : P-value = 0.85 ; Output
Time spent : 24s ; Time Rank =1.5
LogLk = -6166.278761 ; LogLK Rank =3.0
RF distance =0.297
SH with best : P-value = 0.935 ; Output
nucleic_M2856_61x970_2006.phy Time spent : 5m 34s ; Time Rank =4.0
LogLk = -25121.63854 ; LogLK Rank =2.0
RF distance =0.103
SH with best : P-value = 0.952 ; Output
Time spent : 3m 31s ; Time Rank =3.0
LogLk = -25121.68864 ; LogLK Rank =3.0
RF distance =0.068
SH with best : P-value = 0.885 ; Output
Time spent : 51s ; Time Rank =1.0
LogLk = -25122.030454 ; LogLK Rank =4.0
RF distance =0.068
SH with best : P-value = 0.863 ; Output
Time spent : 1m 10s ; Time Rank =2.0
LogLk = -25120.117273 ; LogLK Rank =1.0
RF distance =0.0
Output
nucleic_M2862_54x1011_2006.phy Time spent : 3m 45s ; Time Rank =4.0
LogLk = -16253.084612 ; LogLK Rank =1.5
RF distance =0.019
SH with best : P-value = 1.0 ; Output
Time spent : 2m 40s ; Time Rank =3.0
LogLk = -16253.084546 ; LogLK Rank =1.5
RF distance =0.0
Output
Time spent : 35s ; Time Rank =1.0
LogLk = -16254.352497 ; LogLK Rank =3.0
RF distance =0.039
SH with best : P-value = 0.655 ; Output
Time spent : 59s ; Time Rank =2.0
LogLk = -16255.558163 ; LogLK Rank =4.0
RF distance =0.058
SH with best : P-value = 0.608 ; Output
nucleic_M2921_54x966_2006.phy Time spent : 1m 19s ; Time Rank =3.5
LogLk = -6440.854359 ; LogLK Rank =3.0
RF distance =0.137
SH with best : P-value = 0.763 ; Output
Time spent : 1m 19s ; Time Rank =3.5
LogLk = -6437.665605 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 21s ; Time Rank =1.5
LogLk = -6440.816114 ; LogLK Rank =2.0
RF distance =0.098
SH with best : P-value = 0.596 ; Output
Time spent : 24s ; Time Rank =1.5
LogLk = -6444.558001 ; LogLK Rank =4.0
RF distance =0.196
SH with best : P-value = 0.565 ; Output
nucleic_M2764_57x803_2006.phy Time spent : 1m 27s ; Time Rank =3.0
LogLk = -10157.645233 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 2m 30s ; Time Rank =4.0
LogLk = -10158.276012 ; LogLK Rank =2.0
RF distance =0.074
SH with best : P-value = 0.944 ; Output
Time spent : 43s ; Time Rank =2.0
LogLk = -10159.045618 ; LogLK Rank =4.0
RF distance =0.074
SH with best : P-value = 0.813 ; Output
Time spent : 33s ; Time Rank =1.0
LogLk = -10158.712314 ; LogLK Rank =3.0
RF distance =0.037
SH with best : P-value = 0.804 ; Output
nucleic_M2974_56x827_2006.phy Time spent : 55s ; Time Rank =3.0
LogLk = -5384.189132 ; LogLK Rank =3.0
RF distance =0.226
SH with best : P-value = 0.584 ; Output
Time spent : 1m 18s ; Time Rank =4.0
LogLk = -5378.65891 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 16s ; Time Rank =1.5
LogLk = -5381.891949 ; LogLK Rank =2.0
RF distance =0.283
SH with best : P-value = 0.78 ; Output
Time spent : 19s ; Time Rank =1.5
LogLk = -5384.208415 ; LogLK Rank =4.0
RF distance =0.283
SH with best : P-value = 0.61 ; Output
nucleic_M2702_54x886_2006.phy Time spent : 1m 8s ; Time Rank =3.0
LogLk = -5386.334104 ; LogLK Rank =3.0
RF distance =0.274
SH with best : P-value = 0.755 ; Output
Time spent : 1m 56s ; Time Rank =4.0
LogLk = -5382.361413 ; LogLK Rank =1.5
RF distance =0.137
SH with best : P-value = 1.0 ; Output
Time spent : 24s ; Time Rank =1.5
LogLk = -5382.361164 ; LogLK Rank =1.5
RF distance =0.0
Output
Time spent : 23s ; Time Rank =1.5
LogLk = -5390.172282 ; LogLK Rank =4.0
RF distance =0.274
SH with best : P-value = 0.588 ; Output
nucleic_M2902_51x908_2006.phy Time spent : 56s ; Time Rank =3.0
LogLk = -7593.105691 ; LogLK Rank =3.0
RF distance =0.395
SH with best : P-value = 0.172 ; Output
Time spent : 1m 46s ; Time Rank =4.0
LogLk = -7569.863686 ; LogLK Rank =2.0
RF distance =0.166
SH with best : P-value = 0.773 ; Output
Time spent : 18s ; Time Rank =1.0
LogLk = -7567.463619 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 23s ; Time Rank =2.0
LogLk = -7605.188991 ; LogLK Rank =4.0
RF distance =0.375
SH with best : P-value = 0.125 ; Output
nucleic_M2655_50x872_2006.phy Time spent : 1m 3s ; Time Rank =3.5
LogLk = -6518.188398 ; LogLK Rank =3.0
RF distance =0.17
SH with best : P-value = 0.507 ; Output
Time spent : 1m 3s ; Time Rank =3.5
LogLk = -6511.522478 ; LogLK Rank =2.0
RF distance =0.148
SH with best : P-value = 0.872 ; Output
Time spent : 19s ; Time Rank =1.5
LogLk = -6508.73186 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 19s ; Time Rank =1.5
LogLk = -6521.47317 ; LogLK Rank =4.0
RF distance =0.17
SH with best : P-value = 0.308 ; Output
Nucleic LogLks: Average = 3.21 ; Median = 3.0 Average = 1.36 ; Median = 1.0 Average = 2.19 ; Median = 2.0 Average = 3.24 ; Median = 3.0
Nucleic Times: Average = 3.16 ; Median = 3.0 Average = 3.83 ; Median = 4.0 Average = 1.43 ; Median = 1.5 Average = 1.58 ; Median = 1.5
Average RF distance: 0.2711 0.0692 0.2058 0.2685
Nucleic #Delta>5.0: 33.0 1.0 7.0 35.0
Nucleic #P-Value<0.05: 5.0 0.0 0.0 5.0


Statistics