Gk-arrays: Querying large read collections in main memory: a versatile data structure.
Installation
The installation will create you between a test executable (called
buildTables
) and a library that could be used in any of your programs.
Note: the library usage is simplified since version 1.0.0. If necessary, you can see the
details for using previous versions.
Installation from the source code
- Unpack the archive
- Enter the directory libGkArrays-version-number
- Type
./configure
- If everything went fine, run
make
- To install the library on your machine, type
make install
as an administrator
- Afterwards, you may want to run
ldconfig
as an administrator.
You can specify parameters to the 'configure' script. For instance you can choose to build a static version (quicker) of the library rather than a shared version. Typing
./configure --help
will provide you the list of available options.
Installation from the deb
package
You just need to install the package using a dedicated program on your distribution or by typing
dpkg -i package-name
.
This will install all the four versions of the library (32 and 64 bits, fixed and variable).
Using Gk-arrays in your code
Inside the archive, you will find under the
doc
directory a documentation on how to use the Gk-arrays in your code with a simple example.
A full documentation of the library is available
online or as a downloadable
PDF.
For more information about the Gk-arrays project or download latest update of Gk-arrays, see
Gk-arrays project website