SDM: a Fast Distance-based Approach for (Super)Tree Building in Phylogenomics.
Criscuolo A., Berry V., Douzery E.J.P., Gascuel O. Systematic Biology. 2006 55(5):740-755.
paper if you use SDM.
Distributed by the author. University of Washinton, Seattle.
"An alternating least-squares approach to inferring phylogenies."
Systematic Biology. 1997 46:101-111.
"The average consensus precedure: combination of weighted trees containing identical or overlapping sets of taxa."
Lapointe F.J., Cucumel G.
Systematic Biology. 1997 46:306-312.
"T-REX: reconstructing and visualizing phylogenetic trees and reticulation networks."
Bioinformatics. 2001 17:664-668.
SDM has been developped by: