SMS: Smart Model Selection in PhyML
SMS (Smart Model Selection) automatically selects the best-fitting evolutionary model for an alignment of DNA or protein sequences. It compares substitution models using the AIC or BIC statistical criteria to support phylogenetic tree reconstruction with PhyML.
SMS: Smart Model Selection in PhyML online execution
Other tools
WAVES
Warning : This application is no longer maintained and out of date. If you’re interested in, just have a look to MYST Summary WAVES is a web application dedicated to bioinformatic tool integration. It provides an efficient way to implement a service for any bioinformatic software. Such services are automatically made available in three ways:…
MYST : Manage Your Scientific…
What is MYST? MYST is the orchestration platform behind ATGC online bioinformatics services. It provides a unified web interface and a public REST API to submit analyses, monitor jobs, and retrieve results across a growing catalog of phylogenetic and sequence-analysis tools. MYST is a modernized redesign of WAVES, an older tool previously developped by ATGC…
AQUAPONY
AquaPony: interactive visualization of phylogeographic scenarios AquaPony is a web application designed to explore and interpret evolutionary scenarios on annotated phylogenetic trees (for example, ancestral geographic states). It was built to make uncertainty in ancestral reconstructions easier to understand and communicate. Why AquaPony? In phylogeography, several scenarios can be nearly as plausible as the best…