PhyML 3.0: new algorithms, methods and utilities
Please cite:
"New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0."
"New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0."
Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O.
Systematic Biology, 59(3):307-21, 2010.
Get the latest PhyML releases from GitHub.
Files in the package
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Executable files for Linux, MacOS and Windows systems.
In contrast with the web interface, the PHYLIP-like interface available with the executable files enables to define custom evolutionary models for DNA ; see the Substitution model section in the PHYLIP-like interface user guide (in the package or here). - The PhyML 3.0 manual (in pdf).
- Source code is available from PhyML GitHub page.
© Copyright 2008 CNRS - Universite Montpellier II.
The software is provided "as is" without warranty of any kind. In no event shall the author be held responsible for any damage resulting from the use of this software, including but not limited to the frustration that you may experience in using the package. The program package, including source codes, example data sets, executables, and the user guide, is distributed free of charge for academic use only.
Contact: Vincent Lefort, LIRMM.
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