PhyML 3.0: new algorithms, methods and utilities

Please cite:
"New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0."
Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O.
Systematic Biology, 59(3):307-21, 2010.

PhyML is available on GitHub.

Lastest release: PhyML-3.1

Supplementary versions

Previous versions

These versions of PhyML contain some bugs which were corrected into the PhyML 3.0 version.
PhyML 3.0 was also greatly optimized and provides new functionalities.

Unofficial versions