PhyML 3.0: new algorithms, methods and utilities

Please cite:
"A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood."
Guindon S., Gascuel O.
Systematic Biology, 52(5):696-704, 2003.

PhyML News


PhyML 3.0 is now available
May 2008

PhyML publication becomes a "Current Classic" paper
April 2008
Science Watch

Publication
March 2008
"An Improved General Amino-Acid Replacement Matrix."
Le S.Q., Gascuel O.
Molecular Biology and Evolution. 2008, in press

PhyML reaches 1000 citations
February 2008

Publication
August 2006
"Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative."
Anisimova M., Gascuel O.
Systematic Biology. 55(4):539-552

Publication
December 2005
"Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood."
Hordijk W., Gascuel O.
Bioinformatics 21(24), 4338-4347

PhyML is presented in the CNRS international magazine
See the article

PhyML publication becomes a "Fast Breaking" paper
February 2005
Science Citation Index article