ERaBLE: Evolutionary Rates and Branch Lengths Estimation




ERaBLE is a phylogenomic distance-based method to simultaneously estimate the branch lengths of a given reference topology, and the relative evolutionary rates of the genes employed in the analysis, using a collection of distance matrices (one distance matrix per gene). These distance matrices can either be directly estimated from pairwise alignments of the gene sequences, or they can be calculated from gene trees inferred for each gene.

Downloads

The ERABLE source code, binaries, and datasets are available in the ATGC GitLab repository. Download the software archive for your operating system (Linux or Windows), along with any datasets you need.

Run ERABLE online

ERABLE will also be available to run online through the ATGC platform, allowing you to submit analyses and retrieve results directly from your web browser, without installing the software locally.


LoRDEC: hybrid correction of long reads

LoRDEC: hybrid correction of long…

Overview In a nutshell, LoRDEC is a program for error correcting long sequencing reads using short reads. It implements a hybrid correction approach. It uses little memory and is very efficient. Most importantly it scales up to process very large data sets. It can be applied to long reads obtained with either Pacific Biosciences SMRT…

CompPhy

CompPhy

CompPhy: a web-based collaborative platform for comparing phylogenies CompPhy is a web platform dedicated to the collaborative handling of phylogenetic trees. Users can freely manage collections of trees and communicate on a common project. By collaborative, we mean that several users connected to the same project can manipulation at the same time trees from shared…

Data visualisation Phylogenomics Phylogeny Phylogenetic analysis Phylogenetic sub/super tree construction Phylogenetic tree editing Gene tree newick Nexus format
WAVES

WAVES

Warning : This application is no longer maintained and out of date. If you’re interested in, just have a look to MYST Summary WAVES is a web application dedicated to bioinformatic tool integration. It provides an efficient way to implement a service for any bioinformatic software. Such services are automatically made available in three ways:…