Configuration file PHYML_2.4.5 PHYML_3.0_NNI PHYML_3.0_SPR RAXML
Nucleic LogLks: Average = 3.5 ; Median = 4.0 Average = 3.5 ; Median = 4.0 Average = 1.4 ; Median = 1.5 Average = 1.6 ; Median = 2.0
Nucleic Times: Average = 1.55 ; Median = 1.5 Average = 2.8 ; Median = 2.75 Average = 3.7 ; Median = 4.0 Average = 1.95 ; Median = 2.25
Average RF distance: 0.4749 0.462 0.1517 0.231
Nucleic #Delta>5.0: 10.0 10.0 3.0 5.0
Nucleic #P-Value<0.05: 8.0 7.0 0.0 1.0
nucleic_M3703_1566x915_2008.phy Time spent : 5h 49m 53s ; Time Rank =1.0
LogLk = -79693.773437 ; LogLK Rank =3.0
RF distance =0.523
SH with best : P-value = 1.0 ; Output
Time spent : 117h 33m 55s ; Time Rank =4.0
LogLk = -79829.688633 ; LogLK Rank =4.0
RF distance =0.529
SH with best : P-value = 1.0 ; Output
Time spent : 79h 26m 30s ; Time Rank =3.0
LogLk = -78753.737441 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 11h 16s ; Time Rank =2.0
LogLk = -79270.475516 ; LogLK Rank =2.0
RF distance =0.553
SH with best : P-value = 1.0 ; Output
nucleic_M3562_626x4716_2007.phy Time spent : 1h 46m 9s ; Time Rank =1.0
LogLk = -156012.512851 ; LogLK Rank =3.0
RF distance =0.536
SH with best : P-value = 0.0 ; Output
Time spent : 8h 42m 13s ; Time Rank =2.0
LogLk = -156079.326408 ; LogLK Rank =4.0
RF distance =0.521
SH with best : P-value = 0.0 ; Output
Time spent : 19h 19m 9s ; Time Rank =3.5
LogLk = -154841.206864 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 24h 6m 7s ; Time Rank =3.5
LogLk = -154978.053908 ; LogLK Rank =2.0
RF distance =0.486
SH with best : P-value = 0.471 ; Output
nucleic_M4056_408x9563_2008.phy Time spent : 4h 26m 17s ; Time Rank =1.0
LogLk = -187482.913913 ; LogLK Rank =4.0
RF distance =0.587
SH with best : P-value = 0.0 ; Output
Time spent : 9h 12m 36s ; Time Rank =2.0
LogLk = -187297.707698 ; LogLK Rank =3.0
RF distance =0.567
SH with best : P-value = 0.0 ; Output
Time spent : 28h 14m 34s ; Time Rank =4.0
LogLk = -184348.685689 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 14h 18m 12s ; Time Rank =3.0
LogLk = -184668.27631 ; LogLK Rank =2.0
RF distance =0.437
SH with best : P-value = 0.027 ; Output
nucleic_M4058_406x6016_2008.phy Time spent : 3h 34m 13s ; Time Rank =1.0
LogLk = -472933.449628 ; LogLK Rank =4.0
RF distance =0.374
SH with best : P-value = 0.0 ; Output
Time spent : 8h 43m 56s ; Time Rank =2.5
LogLk = -472890.660258 ; LogLK Rank =3.0
RF distance =0.364
SH with best : P-value = 0.0 ; Output
Time spent : 13h 32m 14s ; Time Rank =4.0
LogLk = -470579.471966 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 8h 37m 13s ; Time Rank =2.5
LogLk = -470681.98713 ; LogLK Rank =2.0
RF distance =0.243
SH with best : P-value = 0.391 ; Output
nucleic_M4057_416x4150_2008.phy Time spent : 1h 40m 38s ; Time Rank =1.0
LogLk = -165241.226624 ; LogLK Rank =3.0
RF distance =0.489
SH with best : P-value = 0.0 ; Output
Time spent : 6h 31m 5s ; Time Rank =3.0
LogLk = -165287.014418 ; LogLK Rank =4.0
RF distance =0.491
SH with best : P-value = 0.0 ; Output
Time spent : 14h 6m 42s ; Time Rank =4.0
LogLk = -163916.725437 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 2h 37m 19s ; Time Rank =2.0
LogLk = -164080.759383 ; LogLK Rank =2.0
RF distance =0.249
SH with best : P-value = 0.11 ; Output
nucleic_M4055_306x7062_2008.phy Time spent : 10h 17m 43s ; Time Rank =2.5
LogLk = -294605.936844 ; LogLK Rank =4.0
RF distance =0.778
SH with best : P-value = 0.0 ; Output
Time spent : 14h 7m 25s ; Time Rank =4.0
LogLk = -285124.066358 ; LogLK Rank =3.0
RF distance =0.557
SH with best : P-value = 0.0 ; Output
Time spent : 11h 7m 19s ; Time Rank =2.5
LogLk = -282124.342849 ; LogLK Rank =2.0
RF distance =0.379
SH with best : P-value = 0.24 ; Output
Time spent : 4h 39m 41s ; Time Rank =1.0
LogLk = -281972.11998 ; LogLK Rank =1.0
RF distance =0.0
Output
nucleic_M3459_407x1707_2007.phy Time spent : 1h 25m 55s ; Time Rank =2.5
LogLk = -19384.047677 ; LogLK Rank =4.0
RF distance =0.349
SH with best : P-value = 0.162 ; Output
Time spent : 1h 24m 47s ; Time Rank =2.5
LogLk = -19377.675629 ; LogLK Rank =3.0
RF distance =0.294
SH with best : P-value = 0.37 ; Output
Time spent : 1h 52m 30s ; Time Rank =4.0
LogLk = -19364.602962 ; LogLK Rank =1.0
RF distance =0.0
Output
Time spent : 43m 24s ; Time Rank =1.0
LogLk = -19365.19171 ; LogLK Rank =2.0
RF distance =0.341
SH with best : P-value = 0.909 ; Output
nucleic_M2839_470x829_2006.phy Time spent : 1h 9m 56s ; Time Rank =2.5
LogLk = -42420.856433 ; LogLK Rank =3.0
RF distance =0.449
SH with best : P-value = 0.0 ; Output
Time spent : 1h 4m 13s ; Time Rank =2.5
LogLk = -42464.772518 ; LogLK Rank =4.0
RF distance =0.505
SH with best : P-value = 0.0 ; Output
Time spent : 3h 15m 20s ; Time Rank =4.0
LogLk = -42235.113394 ; LogLK Rank =2.0
RF distance =0.428
SH with best : P-value = 0.515 ; Output
Time spent : 32m 8s ; Time Rank =1.0
LogLk = -42205.788758 ; LogLK Rank =1.0
RF distance =0.0
Output
nucleic_M3862_362x1207_2008.phy Time spent : 14m 52s ; Time Rank =1.0
LogLk = -94940.631826 ; LogLK Rank =4.0
RF distance =0.155
SH with best : P-value = 0.03 ; Output
Time spent : 33m 16s ; Time Rank =2.5
LogLk = -94910.782403 ; LogLK Rank =3.0
RF distance =0.175
SH with best : P-value = 0.13 ; Output
Time spent : 1h 42m 0s ; Time Rank =4.0
LogLk = -94863.125459 ; LogLK Rank =2.0
RF distance =0.108
SH with best : P-value = 0.688 ; Output
Time spent : 38m 8s ; Time Rank =2.5
LogLk = -94848.914348 ; LogLK Rank =1.0
RF distance =0.0
Output
nucleic_M2573_346x897_2006.phy Time spent : 27m 1s ; Time Rank =2.0
LogLk = -9706.750516 ; LogLK Rank =3.0
RF distance =0.504
SH with best : P-value = 0.016 ; Output
Time spent : 56m 36s ; Time Rank =3.0
LogLk = -9729.626945 ; LogLK Rank =4.0
RF distance =0.612
SH with best : P-value = 0.0040 ; Output
Time spent : 1h 21m 47s ; Time Rank =4.0
LogLk = -9623.590045 ; LogLK Rank =2.0
RF distance =0.6
SH with best : P-value = 0.973 ; Output
Time spent : 16m 16s ; Time Rank =1.0
LogLk = -9622.766495 ; LogLK Rank =1.0
RF distance =0.0
Output
Nucleic LogLks: Average = 3.5 ; Median = 4.0 Average = 3.5 ; Median = 4.0 Average = 1.4 ; Median = 1.5 Average = 1.6 ; Median = 2.0
Nucleic Times: Average = 1.55 ; Median = 1.5 Average = 2.8 ; Median = 2.75 Average = 3.7 ; Median = 4.0 Average = 1.95 ; Median = 2.25
Average RF distance: 0.4749 0.462 0.1517 0.231
Nucleic #Delta>5.0: 10.0 10.0 3.0 5.0
Nucleic #P-Value<0.05: 8.0 7.0 0.0 1.0


Statistics