| Configuration file | PHYML_WIM | PHYML_3.0_SPR_PARS=0 | PHYML_3.0_SPR | PHYML_3.0_SPR_PARS=INFINITY | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Nucleic LogLks: | Average = 3.49 ; Median = 4.0 | Average = 2.43 ; Median = 2.0 | Average = 2.17 ; Median = 2.0 | Average = 1.91 ; Median = 2.0 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Nucleic Times: | Average = 1.31 ; Median = 1.0 | Average = 2.15 ; Median = 2.5 | Average = 2.54 ; Median = 2.5 | Average = 4.0 ; Median = 4.0 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Average RF distance: | 0.242 | 0.0947 | 0.0588 | 0.0513
| Nucleic #Delta>5.0: |
| 15.0
| 3.0
| 2.0
| 2.0
| Nucleic #P-Value<0.05: |
| 1.0 |
0.0 |
0.0 |
0.0 |
nucleic_M2572_191x990_2006.phy |
| Time spent : 3m 19s ; Time Rank =1.0 |
LogLk = -3508.437585 ; LogLK Rank =4.0 RF distance =0.691 SH with best : P-value = 0.892 ; Output Time spent : 4m 42s ; Time Rank =2.0 |
LogLk = -3508.007923 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 9m 15s ; Time Rank =3.0 |
LogLk = -3508.007923 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 30m 53s ; Time Rank =4.0 |
LogLk = -3508.007923 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2587_117x1910_2006.phy |
| Time spent : 20m 17s ; Time Rank =1.0 |
LogLk = -16019.895165 ; LogLK Rank =4.0 RF distance =0.324 SH with best : P-value = 0.16 ; Output Time spent : 27m 26s ; Time Rank =2.0 |
LogLk = -15989.417294 ; LogLK Rank =3.0 RF distance =0.228 SH with best : P-value = 0.542 ; Output Time spent : 39m 38s ; Time Rank =3.0 |
LogLk = -15969.512094 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 2h 29m 27s ; Time Rank =4.0 |
LogLk = -15983.392966 ; LogLK Rank =2.0 RF distance =0.201 SH with best : P-value = 0.398 ; Output nucleic_M2564_142x1130_2006.phy |
| Time spent : 16m 36s ; Time Rank =1.0 |
LogLk = -20405.457376 ; LogLK Rank =3.0 RF distance =0.294 SH with best : P-value = 0.729 ; Output Time spent : 21m 53s ; Time Rank =2.5 |
LogLk = -20406.195359 ; LogLK Rank =4.0 RF distance =0.23 SH with best : P-value = 0.741 ; Output Time spent : 22m 14s ; Time Rank =2.5 |
LogLk = -20397.29492 ; LogLK Rank =2.0 RF distance =0.0070 SH with best : P-value = 1.0 ; Output Time spent : 1h 53m 5s ; Time Rank =4.0 |
LogLk = -20397.258808 ; LogLK Rank =1.0 RF distance =0.0 Output nucleic_M2792_166x812_2006.phy |
| Time spent : 6m 35s ; Time Rank =1.0 |
LogLk = -10561.842792 ; LogLK Rank =3.0 RF distance =0.257 SH with best : P-value = 0.738 ; Output Time spent : 15m 12s ; Time Rank =2.5 |
LogLk = -10563.777651 ; LogLK Rank =4.0 RF distance =0.196 SH with best : P-value = 0.652 ; Output Time spent : 16m 45s ; Time Rank =2.5 |
LogLk = -10554.781167 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 1h 54m 33s ; Time Rank =4.0 |
LogLk = -10555.107001 ; LogLK Rank =2.0 RF distance =0.079 SH with best : P-value = 0.978 ; Output nucleic_M2707_115x1677_2006.phy |
| Time spent : 10m 43s ; Time Rank =1.0 |
LogLk = -9803.872888 ; LogLK Rank =4.0 RF distance =0.553 SH with best : P-value = 0.0010 ; Output Time spent : 27m 50s ; Time Rank =2.5 |
LogLk = -9712.795038 ; LogLK Rank =2.0 RF distance =0.392 SH with best : P-value = 0.825 ; Output Time spent : 32m 27s ; Time Rank =2.5 |
LogLk = -9719.716553 ; LogLK Rank =3.0 RF distance =0.419 SH with best : P-value = 0.615 ; Output Time spent : 2h 6m 27s ; Time Rank =4.0 |
LogLk = -9709.486327 ; LogLK Rank =1.0 RF distance =0.0 Output nucleic_M2623_139x1044_2006.phy |
| Time spent : 18m 23s ; Time Rank =1.0 |
LogLk = -45880.483356 ; LogLK Rank =4.0 RF distance =0.227 SH with best : P-value = 0.349 ; Output Time spent : 31m 27s ; Time Rank =2.5 |
LogLk = -45860.724923 ; LogLK Rank =2.0 RF distance =0.11 SH with best : P-value = 0.976 ; Output Time spent : 33m 56s ; Time Rank =2.5 |
LogLk = -45861.025631 ; LogLK Rank =3.0 RF distance =0.036 SH with best : P-value = 0.928 ; Output Time spent : 3h 2m 13s ; Time Rank =4.0 |
LogLk = -45860.016707 ; LogLK Rank =1.0 RF distance =0.0 Output nucleic_M2916_143x897_2006.phy |
| Time spent : 13m 18s ; Time Rank =2.5 |
LogLk = -3461.660875 ; LogLK Rank =4.0 RF distance =0.507 SH with best : P-value = 0.147 ; Output Time spent : 4m 13s ; Time Rank =1.0 |
LogLk = -3461.151501 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 13m 45s ; Time Rank =2.5 |
LogLk = -3461.151501 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 43m 7s ; Time Rank =4.0 |
LogLk = -3461.151501 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2711_123x1181_2006.phy |
| Time spent : 4m 26s ; Time Rank =1.0 |
LogLk = -10664.301787 ; LogLK Rank =4.0 RF distance =0.358 SH with best : P-value = 0.41 ; Output Time spent : 8m 16s ; Time Rank =2.0 |
LogLk = -10656.264216 ; LogLK Rank =3.0 RF distance =0.2 SH with best : P-value = 0.896 ; Output Time spent : 17m 46s ; Time Rank =3.0 |
LogLk = -10656.188722 ; LogLK Rank =2.0 RF distance =0.108 SH with best : P-value = 0.908 ; Output Time spent : 44m 20s ; Time Rank =4.0 |
LogLk = -10655.181955 ; LogLK Rank =1.0 RF distance =0.0 Output nucleic_M2933_99x1634_2006.phy |
| Time spent : 20m 57s ; Time Rank =3.0 |
LogLk = -7619.632588 ; LogLK Rank =3.0 RF distance =0.5 SH with best : P-value = 0.815 ; Output Time spent : 9m 45s ; Time Rank =1.0 |
LogLk = -7617.344969 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 12m 30s ; Time Rank =2.0 |
LogLk = -7618.525716 ; LogLK Rank =2.0 RF distance =0.312 SH with best : P-value = 0.929 ; Output Time spent : 30m 13s ; Time Rank =4.0 |
LogLk = -7623.420772 ; LogLK Rank =4.0 RF distance =0.322 SH with best : P-value = 0.632 ; Output nucleic_M2606_110x1206_2006.phy |
| Time spent : 4m 19s ; Time Rank =1.0 |
LogLk = -26945.54982 ; LogLK Rank =3.0 RF distance =0.065 SH with best : P-value = 0.987 ; Output Time spent : 8m 31s ; Time Rank =2.5 |
LogLk = -26946.151631 ; LogLK Rank =4.0 RF distance =0.056 SH with best : P-value = 0.942 ; Output Time spent : 7m 27s ; Time Rank =2.5 |
LogLk = -26945.397843 ; LogLK Rank =2.0 RF distance =0.028 SH with best : P-value = 1.0 ; Output Time spent : 37m 16s ; Time Rank =4.0 |
LogLk = -26945.302796 ; LogLK Rank =1.0 RF distance =0.0 Output nucleic_M2752_106x1292_2006.phy |
| Time spent : 2m 10s ; Time Rank =1.5 |
LogLk = -7871.398538 ; LogLK Rank =4.0 RF distance =0.174 SH with best : P-value = 0.808 ; Output Time spent : 2m 41s ; Time Rank =1.5 |
LogLk = -7869.077264 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 4m 34s ; Time Rank =3.0 |
LogLk = -7869.077264 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 18m 40s ; Time Rank =4.0 |
LogLk = -7869.077264 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2946_110x1003_2006.phy |
| Time spent : 4m 3s ; Time Rank =1.0 |
LogLk = -17033.638546 ; LogLK Rank =4.0 RF distance =0.158 SH with best : P-value = 0.104 ; Output Time spent : 14m 29s ; Time Rank =3.0 |
LogLk = -16992.973662 ; LogLK Rank =2.0 RF distance =0.0090 SH with best : P-value = 1.0 ; Output Time spent : 7m 12s ; Time Rank =2.0 |
LogLk = -16992.973865 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 52m 6s ; Time Rank =4.0 |
LogLk = -16992.973523 ; LogLK Rank =2.0 RF distance =0.0 Output nucleic_M2770_86x1628_2006.phy |
| Time spent : 2m 25s ; Time Rank =1.5 |
LogLk = -5807.97325 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 2m 44s ; Time Rank =1.5 |
LogLk = -5809.631777 ; LogLK Rank =3.0 RF distance =0.168 SH with best : P-value = 0.859 ; Output Time spent : 4m 21s ; Time Rank =3.0 |
LogLk = -5809.631777 ; LogLK Rank =3.0 RF distance =0.168 SH with best : P-value = 0.851 ; Output Time spent : 12m 21s ; Time Rank =4.0 |
LogLk = -5809.631777 ; LogLK Rank =3.0 RF distance =0.168 SH with best : P-value = 0.854 ; Output nucleic_M2786_104x1051_2006.phy |
| Time spent : 7m 21s ; Time Rank =1.5 |
LogLk = -15659.178109 ; LogLK Rank =2.0 RF distance =0.079 SH with best : P-value = 1.0 ; Output Time spent : 6m 10s ; Time Rank =1.5 |
LogLk = -15659.128153 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 8m 1s ; Time Rank =3.0 |
LogLk = -15660.385831 ; LogLK Rank =4.0 RF distance =0.089 SH with best : P-value = 0.955 ; Output Time spent : 29m 3s ; Time Rank =4.0 |
LogLk = -15659.260024 ; LogLK Rank =3.0 RF distance =0.059 SH with best : P-value = 0.997 ; Output nucleic_M2928_81x1651_2006.phy |
| Time spent : 4m 52s ; Time Rank =2.5 |
LogLk = -6689.963737 ; LogLK Rank =4.0 RF distance =0.487 SH with best : P-value = 0.916 ; Output Time spent : 3m 17s ; Time Rank =1.0 |
LogLk = -6689.658164 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 4m 34s ; Time Rank =2.5 |
LogLk = -6689.658291 ; LogLK Rank =2.0 RF distance =0.102 SH with best : P-value = 1.0 ; Output Time spent : 15m 45s ; Time Rank =4.0 |
LogLk = -6689.658291 ; LogLK Rank =2.0 RF distance =0.102 SH with best : P-value = 1.0 ; Output nucleic_M2944_80x1495_2006.phy |
| Time spent : 1m 39s ; Time Rank =1.0 |
LogLk = -8995.714014 ; LogLK Rank =4.0 RF distance =0.194 SH with best : P-value = 0.72 ; Output Time spent : 2m 46s ; Time Rank =2.0 |
LogLk = -8989.456351 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 5m 34s ; Time Rank =3.0 |
LogLk = -8989.652837 ; LogLK Rank =2.5 RF distance =0.064 SH with best : P-value = 0.987 ; Output Time spent : 17m 13s ; Time Rank =4.0 |
LogLk = -8989.652837 ; LogLK Rank =2.5 RF distance =0.064 SH with best : P-value = 0.989 ; Output nucleic_M2975_93x982_2006.phy |
| Time spent : 2m 22s ; Time Rank =1.0 |
LogLk = -12297.995011 ; LogLK Rank =4.0 RF distance =0.177 SH with best : P-value = 0.288 ; Output Time spent : 9m 41s ; Time Rank =3.0 |
LogLk = -12285.578193 ; LogLK Rank =1.5 RF distance =0.055 SH with best : P-value = 1.0 ; Output Time spent : 7m 17s ; Time Rank =2.0 |
LogLk = -12285.612068 ; LogLK Rank =3.0 RF distance =0.055 SH with best : P-value = 1.0 ; Output Time spent : 32m 39s ; Time Rank =4.0 |
LogLk = -12285.577896 ; LogLK Rank =1.5 RF distance =0.0 Output nucleic_M2845_68x1715_2006.phy |
| Time spent : 1m 15s ; Time Rank =1.0 |
LogLk = -11360.628584 ; LogLK Rank =3.0 RF distance =0.061 SH with best : P-value = 0.669 ; Output Time spent : 2m 48s ; Time Rank =2.5 |
LogLk = -11362.209555 ; LogLK Rank =4.0 RF distance =0.061 SH with best : P-value = 0.725 ; Output Time spent : 3m 27s ; Time Rank =2.5 |
LogLk = -11358.079001 ; LogLK Rank =1.5 RF distance =0.0 Output Time spent : 14m 54s ; Time Rank =4.0 |
LogLk = -11358.079001 ; LogLK Rank =1.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2932_68x1712_2006.phy |
| Time spent : 4m 7s ; Time Rank =1.0 |
LogLk = -14921.429038 ; LogLK Rank =4.0 RF distance =0.246 SH with best : P-value = 0.993 ; Output Time spent : 11m 29s ; Time Rank =2.5 |
LogLk = -14921.331478 ; LogLK Rank =3.0 RF distance =0.2 SH with best : P-value = 1.0 ; Output Time spent : 11m 56s ; Time Rank =2.5 |
LogLk = -14921.302358 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 29m 2s ; Time Rank =4.0 |
LogLk = -14921.308572 ; LogLK Rank =2.0 RF distance =0.215 SH with best : P-value = 1.0 ; Output nucleic_M2716_79x1252_2006.phy |
| Time spent : 1m 42s ; Time Rank =1.5 |
LogLk = -3354.635799 ; LogLK Rank =4.0 RF distance =0.71 SH with best : P-value = 0.298 ; Output Time spent : 2m 5s ; Time Rank =1.5 |
LogLk = -3344.749024 ; LogLK Rank =3.0 RF distance =0.21 SH with best : P-value = 1.0 ; Output Time spent : 3m 53s ; Time Rank =3.0 |
LogLk = -3344.747935 ; LogLK Rank =1.5 RF distance =0.0 Output Time spent : 8m 35s ; Time Rank =4.0 |
LogLk = -3344.747935 ; LogLK Rank =1.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2708_78x1107_2006.phy |
| Time spent : 10m 55s ; Time Rank =3.0 |
LogLk = -6531.622132 ; LogLK Rank =4.0 RF distance =0.426 SH with best : P-value = 0.509 ; Output Time spent : 7m 48s ; Time Rank =2.0 |
LogLk = -6527.550241 ; LogLK Rank =2.0 RF distance =0.32 SH with best : P-value = 0.946 ; Output Time spent : 5m 1s ; Time Rank =1.0 |
LogLk = -6527.666726 ; LogLK Rank =3.0 RF distance =0.28 SH with best : P-value = 0.942 ; Output Time spent : 21m 58s ; Time Rank =4.0 |
LogLk = -6527.218095 ; LogLK Rank =1.0 RF distance =0.0 Output nucleic_M2922_77x1101_2006.phy |
| Time spent : 23s ; Time Rank =1.0 |
LogLk = -3029.305445 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 51s ; Time Rank =2.0 |
LogLk = -3033.804946 ; LogLK Rank =3.0 RF distance =0.459 SH with best : P-value = 0.271 ; Output Time spent : 2m 36s ; Time Rank =3.0 |
LogLk = -3033.80493 ; LogLK Rank =3.0 RF distance =0.472 SH with best : P-value = 0.243 ; Output Time spent : 5m 53s ; Time Rank =4.0 |
LogLk = -3033.80493 ; LogLK Rank =3.0 RF distance =0.472 SH with best : P-value = 0.267 ; Output nucleic_M2913_81x897_2006.phy |
| Time spent : 3m 34s ; Time Rank =2.0 |
LogLk = -2411.7347 ; LogLK Rank =4.0 RF distance =0.589 SH with best : P-value = 0.852 ; Output Time spent : 1m 30s ; Time Rank =1.0 |
LogLk = -2410.257237 ; LogLK Rank =3.0 RF distance =0.461 SH with best : P-value = 0.356 ; Output Time spent : 6m 16s ; Time Rank =3.0 |
LogLk = -2409.417748 ; LogLK Rank =1.5 RF distance =0.0 Output Time spent : 10m 49s ; Time Rank =4.0 |
LogLk = -2409.417748 ; LogLK Rank =1.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2901_56x1802_2006.phy |
| Time spent : 1m 57s ; Time Rank =1.0 |
LogLk = -7823.806712 ; LogLK Rank =3.0 RF distance =0.226 SH with best : P-value = 1.0 ; Output Time spent : 3m 49s ; Time Rank =2.5 |
LogLk = -7828.13855 ; LogLK Rank =4.0 RF distance =0.32 SH with best : P-value = 0.741 ; Output Time spent : 4m 31s ; Time Rank =2.5 |
LogLk = -7823.712571 ; LogLK Rank =1.5 RF distance =0.0 Output Time spent : 13m 56s ; Time Rank =4.0 |
LogLk = -7823.712571 ; LogLK Rank =1.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2627_54x1915_2006.phy |
| Time spent : 3m 44s ; Time Rank =1.0 |
LogLk = -35253.134275 ; LogLK Rank =2.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 5m 2s ; Time Rank =2.5 |
LogLk = -35253.126644 ; LogLK Rank =2.5 RF distance =0.0 Output Time spent : 5m 1s ; Time Rank =2.5 |
LogLk = -35253.127376 ; LogLK Rank =2.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 13m 41s ; Time Rank =4.0 |
LogLk = -35253.127563 ; LogLK Rank =2.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2588_68x1196_2006.phy |
| Time spent : 7m 58s ; Time Rank =3.0 |
LogLk = -12044.3818 ; LogLK Rank =4.0 RF distance =0.476 SH with best : P-value = 0.1 ; Output Time spent : 5m 25s ; Time Rank =1.5 |
LogLk = -12024.23728 ; LogLK Rank =3.0 RF distance =0.276 SH with best : P-value = 0.829 ; Output Time spent : 4m 53s ; Time Rank =1.5 |
LogLk = -12022.680231 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 23m 55s ; Time Rank =4.0 |
LogLk = -12022.687348 ; LogLK Rank =2.0 RF distance =0.215 SH with best : P-value = 1.0 ; Output nucleic_M2772_77x900_2006.phy |
| Time spent : 1m 47s ; Time Rank =1.0 |
LogLk = -7194.221702 ; LogLK Rank =4.0 RF distance =0.148 SH with best : P-value = 0.917 ; Output Time spent : 2m 38s ; Time Rank =2.0 |
LogLk = -7193.405612 ; LogLK Rank =3.0 RF distance =0.013 SH with best : P-value = 1.0 ; Output Time spent : 3m 29s ; Time Rank =3.0 |
LogLk = -7193.307136 ; LogLK Rank =1.5 RF distance =0.027 SH with best : P-value = 1.0 ; Output Time spent : 17m 50s ; Time Rank =4.0 |
LogLk = -7193.307076 ; LogLK Rank =1.5 RF distance =0.0 Output nucleic_M2771_52x1896_2006.phy |
| Time spent : 2m 11s ; Time Rank =1.0 |
LogLk = -13987.742148 ; LogLK Rank =3.0 RF distance =0.183 SH with best : P-value = 0.735 ; Output Time spent : 2m 53s ; Time Rank =2.5 |
LogLk = -13984.145837 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 3m 36s ; Time Rank =2.5 |
LogLk = -13993.226072 ; LogLK Rank =4.0 RF distance =0.224 SH with best : P-value = 0.667 ; Output Time spent : 13m 41s ; Time Rank =4.0 |
LogLk = -13987.675879 ; LogLK Rank =2.0 RF distance =0.285 SH with best : P-value = 0.857 ; Output nucleic_M2565_51x1951_2006.phy |
| Time spent : 1m 2s ; Time Rank =1.0 |
LogLk = -14657.782903 ; LogLK Rank =4.0 RF distance =0.041 SH with best : P-value = 1.0 ; Output Time spent : 2m 48s ; Time Rank =2.5 |
LogLk = -14657.766618 ; LogLK Rank =2.0 RF distance =0.02 SH with best : P-value = 1.0 ; Output Time spent : 2m 19s ; Time Rank =2.5 |
LogLk = -14657.766539 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 8m 24s ; Time Rank =4.0 |
LogLk = -14657.766568 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2826_60x1398_2006.phy |
| Time spent : 1m 41s ; Time Rank =1.0 |
LogLk = -14344.503011 ; LogLK Rank =4.0 RF distance =0.315 SH with best : P-value = 0.394 ; Output Time spent : 3m 56s ; Time Rank =2.5 |
LogLk = -14329.588051 ; LogLK Rank =3.0 RF distance =0.105 SH with best : P-value = 0.873 ; Output Time spent : 4m 19s ; Time Rank =2.5 |
LogLk = -14327.93025 ; LogLK Rank =1.5 RF distance =0.0 Output Time spent : 14m 7s ; Time Rank =4.0 |
LogLk = -14327.930316 ; LogLK Rank =1.5 RF distance =0.052 SH with best : P-value = 1.0 ; Output nucleic_M2599_66x1137_2006.phy |
| Time spent : 8s ; Time Rank =1.0 |
LogLk = -2163.610557 ; LogLK Rank =4.0 RF distance =0.73 SH with best : P-value = 0.23 ; Output Time spent : 34s ; Time Rank =2.0 |
LogLk = -2163.487251 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 1m 35s ; Time Rank =3.0 |
LogLk = -2163.487251 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 2m 19s ; Time Rank =4.0 |
LogLk = -2163.487251 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2566_73x918_2006.phy |
| Time spent : 2m 0s ; Time Rank =1.0 |
LogLk = -12000.753394 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 2m 46s ; Time Rank =2.5 |
LogLk = -12001.983387 ; LogLK Rank =4.0 RF distance =0.042 SH with best : P-value = 0.893 ; Output Time spent : 3m 4s ; Time Rank =2.5 |
LogLk = -12000.997416 ; LogLK Rank =2.5 RF distance =0.028 SH with best : P-value = 0.982 ; Output Time spent : 13m 37s ; Time Rank =4.0 |
LogLk = -12000.997986 ; LogLK Rank =2.5 RF distance =0.028 SH with best : P-value = 0.985 ; Output nucleic_M2945_62x1271_2006.phy |
| Time spent : 4m 37s ; Time Rank =1.0 |
LogLk = -35119.060425 ; LogLK Rank =4.0 RF distance =0.186 SH with best : P-value = 0.433 ; Output Time spent : 9m 23s ; Time Rank =2.5 |
LogLk = -35105.928764 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 8m 5s ; Time Rank =2.5 |
LogLk = -35105.929217 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 25m 10s ; Time Rank =4.0 |
LogLk = -35105.928966 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2662_60x1348_2006.phy |
| Time spent : 1m 43s ; Time Rank =1.0 |
LogLk = -12346.256732 ; LogLK Rank =2.5 RF distance =0.0 Output Time spent : 3m 51s ; Time Rank =2.5 |
LogLk = -12346.291378 ; LogLK Rank =2.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 3m 10s ; Time Rank =2.5 |
LogLk = -12346.290635 ; LogLK Rank =2.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 11m 10s ; Time Rank =4.0 |
LogLk = -12346.290481 ; LogLK Rank =2.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2661_66x1027_2006.phy |
| Time spent : 1m 15s ; Time Rank =1.0 |
LogLk = -9131.60754 ; LogLK Rank =4.0 RF distance =0.126 SH with best : P-value = 1.0 ; Output Time spent : 2m 5s ; Time Rank =2.5 |
LogLk = -9131.553438 ; LogLK Rank =2.0 RF distance =0.095 SH with best : P-value = 1.0 ; Output Time spent : 2m 20s ; Time Rank =2.5 |
LogLk = -9131.553478 ; LogLK Rank =2.0 RF distance =0.047 SH with best : P-value = 1.0 ; Output Time spent : 10m 44s ; Time Rank =4.0 |
LogLk = -9131.552931 ; LogLK Rank =2.0 RF distance =0.0 Output nucleic_M2733_60x1207_2006.phy |
| Time spent : 53s ; Time Rank =1.0 |
LogLk = -10944.040858 ; LogLK Rank =4.0 RF distance =0.157 SH with best : P-value = 0.784 ; Output Time spent : 1m 44s ; Time Rank =2.5 |
LogLk = -10940.259388 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 2m 8s ; Time Rank =2.5 |
LogLk = -10940.259448 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 8m 22s ; Time Rank =4.0 |
LogLk = -10940.259448 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2738_53x1538_2006.phy |
| Time spent : 4m 23s ; Time Rank =3.0 |
LogLk = -13910.245621 ; LogLK Rank =4.0 RF distance =0.1 SH with best : P-value = 0.716 ; Output Time spent : 3m 14s ; Time Rank =1.5 |
LogLk = -13907.776574 ; LogLK Rank =1.5 RF distance =0.0 Output Time spent : 3m 25s ; Time Rank =1.5 |
LogLk = -13908.535048 ; LogLK Rank =3.0 RF distance =0.06 SH with best : P-value = 0.927 ; Output Time spent : 8m 40s ; Time Rank =4.0 |
LogLk = -13907.776649 ; LogLK Rank =1.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2567_64x1044_2006.phy |
| Time spent : 48s ; Time Rank =1.0 |
LogLk = -6792.964777 ; LogLK Rank =4.0 RF distance =0.147 SH with best : P-value = 0.917 ; Output Time spent : 1m 24s ; Time Rank =2.0 |
LogLk = -6791.956055 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 1m 46s ; Time Rank =3.0 |
LogLk = -6791.956055 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 6m 18s ; Time Rank =4.0 |
LogLk = -6791.956055 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2675_51x1537_2006.phy |
| Time spent : 50s ; Time Rank =1.0 |
LogLk = -7858.577169 ; LogLK Rank =4.0 RF distance =0.166 SH with best : P-value = 0.529 ; Output Time spent : 2m 32s ; Time Rank =3.0 |
LogLk = -7855.80588 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 1m 56s ; Time Rank =2.0 |
LogLk = -7855.805506 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 5m 25s ; Time Rank =4.0 |
LogLk = -7855.805506 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2879_70x800_2006.phy |
| Time spent : 2m 7s ; Time Rank =1.5 |
LogLk = -5782.147955 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 2m 28s ; Time Rank =1.5 |
LogLk = -5782.167801 ; LogLK Rank =3.0 RF distance =0.119 SH with best : P-value = 1.0 ; Output Time spent : 4m 16s ; Time Rank =3.0 |
LogLk = -5782.167774 ; LogLK Rank =3.0 RF distance =0.134 SH with best : P-value = 1.0 ; Output Time spent : 14m 1s ; Time Rank =4.0 |
LogLk = -5782.167774 ; LogLK Rank =3.0 RF distance =0.134 SH with best : P-value = 1.0 ; Output nucleic_M2600_69x814_2006.phy |
| Time spent : 8s ; Time Rank =1.0 |
LogLk = -1753.047951 ; LogLK Rank =4.0 RF distance =0.53 SH with best : P-value = 0.252 ; Output Time spent : 22s ; Time Rank =2.0 |
LogLk = -1752.93643 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 1m 4s ; Time Rank =3.0 |
LogLk = -1752.93643 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 2m 4s ; Time Rank =4.0 |
LogLk = -1752.93643 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2696_50x1472_2006.phy |
| Time spent : 35s ; Time Rank =1.0 |
LogLk = -6165.4224 ; LogLK Rank =4.0 RF distance =0.191 SH with best : P-value = 1.0 ; Output Time spent : 1m 19s ; Time Rank =2.0 |
LogLk = -6165.384557 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 2m 6s ; Time Rank =3.0 |
LogLk = -6165.384557 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 4m 25s ; Time Rank =4.0 |
LogLk = -6165.384557 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2856_61x970_2006.phy |
| Time spent : 3m 26s ; Time Rank =2.0 |
LogLk = -25127.228836 ; LogLK Rank =4.0 RF distance =0.103 SH with best : P-value = 0.631 ; Output Time spent : 3m 32s ; Time Rank =2.0 |
LogLk = -25122.54925 ; LogLK Rank =3.0 RF distance =0.137 SH with best : P-value = 0.845 ; Output Time spent : 3m 31s ; Time Rank =2.0 |
LogLk = -25121.68864 ; LogLK Rank =2.0 RF distance =0.034 SH with best : P-value = 0.707 ; Output Time spent : 11m 36s ; Time Rank =4.0 |
LogLk = -25117.933785 ; LogLK Rank =1.0 RF distance =0.0 Output nucleic_M2862_54x1011_2006.phy |
| Time spent : 1m 32s ; Time Rank =1.0 |
LogLk = -16253.092935 ; LogLK Rank =4.0 RF distance =0.019 SH with best : P-value = 1.0 ; Output Time spent : 3m 0s ; Time Rank =2.5 |
LogLk = -16253.084629 ; LogLK Rank =2.0 RF distance =0.019 SH with best : P-value = 1.0 ; Output Time spent : 2m 40s ; Time Rank =2.5 |
LogLk = -16253.084546 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 7m 53s ; Time Rank =4.0 |
LogLk = -16253.083666 ; LogLK Rank =2.0 RF distance =0.0 Output nucleic_M2921_54x966_2006.phy |
| Time spent : 33s ; Time Rank =1.0 |
LogLk = -6442.636764 ; LogLK Rank =4.0 RF distance =0.156 SH with best : P-value = 0.556 ; Output Time spent : 1m 20s ; Time Rank =2.5 |
LogLk = -6438.347406 ; LogLK Rank =3.0 RF distance =0.039 SH with best : P-value = 0.918 ; Output Time spent : 1m 19s ; Time Rank =2.5 |
LogLk = -6437.665605 ; LogLK Rank =1.5 RF distance =0.0 Output Time spent : 4m 49s ; Time Rank =4.0 |
LogLk = -6437.665605 ; LogLK Rank =1.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2764_57x803_2006.phy |
| Time spent : 44s ; Time Rank =1.0 |
LogLk = -10157.98708 ; LogLK Rank =2.5 RF distance =0.074 SH with best : P-value = 0.927 ; Output Time spent : 2m 8s ; Time Rank =2.5 |
LogLk = -10157.986154 ; LogLK Rank =2.5 RF distance =0.055 SH with best : P-value = 0.945 ; Output Time spent : 2m 30s ; Time Rank =2.5 |
LogLk = -10158.276012 ; LogLK Rank =4.0 RF distance =0.055 SH with best : P-value = 0.964 ; Output Time spent : 8m 12s ; Time Rank =4.0 |
LogLk = -10157.644996 ; LogLK Rank =1.0 RF distance =0.0 Output nucleic_M2974_56x827_2006.phy |
| Time spent : 40s ; Time Rank =1.0 |
LogLk = -5384.158819 ; LogLK Rank =4.0 RF distance =0.301 SH with best : P-value = 0.719 ; Output Time spent : 1m 36s ; Time Rank =2.5 |
LogLk = -5379.881357 ; LogLK Rank =3.0 RF distance =0.132 SH with best : P-value = 0.857 ; Output Time spent : 1m 18s ; Time Rank =2.5 |
LogLk = -5378.65891 ; LogLK Rank =1.5 RF distance =0.0 Output Time spent : 6m 19s ; Time Rank =4.0 |
LogLk = -5378.65891 ; LogLK Rank =1.5 RF distance =0.0 SH with best : P-value = 1.0 ; Output nucleic_M2702_54x886_2006.phy |
| Time spent : 39s ; Time Rank =1.0 |
LogLk = -5386.365564 ; LogLK Rank =4.0 RF distance =0.313 SH with best : P-value = 0.754 ; Output Time spent : 1m 42s ; Time Rank =2.5 |
LogLk = -5382.361105 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 1m 56s ; Time Rank =2.5 |
LogLk = -5382.361413 ; LogLK Rank =2.0 RF distance =0.058 SH with best : P-value = 1.0 ; Output Time spent : 6m 40s ; Time Rank =4.0 |
LogLk = -5382.361413 ; LogLK Rank =2.0 RF distance =0.058 SH with best : P-value = 1.0 ; Output nucleic_M2902_51x908_2006.phy |
| Time spent : 1m 15s ; Time Rank =1.0 |
LogLk = -7572.442504 ; LogLK Rank =4.0 RF distance =0.208 SH with best : P-value = 0.847 ; Output Time spent : 1m 51s ; Time Rank =2.5 |
LogLk = -7569.268973 ; LogLK Rank =1.0 RF distance =0.0 Output Time spent : 1m 46s ; Time Rank =2.5 |
LogLk = -7569.863686 ; LogLK Rank =2.5 RF distance =0.125 SH with best : P-value = 0.966 ; Output Time spent : 7m 46s ; Time Rank =4.0 |
LogLk = -7569.863765 ; LogLK Rank =2.5 RF distance =0.104 SH with best : P-value = 0.972 ; Output nucleic_M2655_50x872_2006.phy |
| Time spent : 30s ; Time Rank =1.0 |
LogLk = -6516.140319 ; LogLK Rank =4.0 RF distance =0.106 SH with best : P-value = 0.713 ; Output Time spent : 53s ; Time Rank =2.5 |
LogLk = -6511.52253 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Time spent : 1m 3s ; Time Rank =2.5 |
LogLk = -6511.522478 ; LogLK Rank =2.0 RF distance =0.0 Output Time spent : 3m 34s ; Time Rank =4.0 |
LogLk = -6511.522478 ; LogLK Rank =2.0 RF distance =0.0 SH with best : P-value = 1.0 ; Output Nucleic LogLks: |
| Average = 3.49 ; Median = 4.0 |
Average = 2.43 ; Median = 2.0 |
Average = 2.17 ; Median = 2.0 |
Average = 1.91 ; Median = 2.0 |
Nucleic Times: |
| Average = 1.31 ; Median = 1.0 |
Average = 2.15 ; Median = 2.5 |
Average = 2.54 ; Median = 2.5 |
Average = 4.0 ; Median = 4.0 |
Average RF distance: |
| 0.242
| 0.0947
| 0.0588
| 0.0513
| Nucleic #Delta>5.0: |
| 15.0
| 3.0
| 2.0
| 2.0
| Nucleic #P-Value<0.05: |
| 1.0 |
0.0 |
0.0 |
0.0 | |